RchiOBHm_Chr1g0343061

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0021329
Physical Location & Seq
Reverse (-)
34936533 .. 34936808
276 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGGGTGTTGCTGAGGACTGCCGCAATACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGGAGAAAGAGGTTGTGGTAGAAAAGACTGGAGGCCCAGCTGAAATTTATGATGATTTCACTGGTTCATTGCCTGAAAATGATTGCCAATATGCAATCTATGACTTTGATTTTGTCATTTCAGAGAATTGCCAAAAGAGCAAGATCTTCTTCATTGCATGGTTTGTTTCTTTTGGTTATTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

91

Amino Acids

10.7

Weight (kDa)

4.64

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 2 - 83 1.1e-20 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021329)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0343061 RchiOBHm_Chr3g0490851
rosa_multiflora Rmu_sc0003545.1_g000013
rosa_roxburghii Rroxscaffold_1G00041390
rosa_samantha Rh1AG137600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 22
AcsI RAATTY 1 cut(s) 132
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AoxI GGCC 2 cut(s) 54, 121
ApoI RAATTY 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspS9I GGNCC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 231
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 121, 154
Bse3DI GCAATG 2 cut(s) 155, 240
BseMI GCAATG 2 cut(s) 155, 240
BseNI ACTGG 2 cut(s) 121, 154
BseYI CCCAGC 1 cut(s) 124
BshFI GGCC 2 cut(s) 56, 123
BsnI GGCC 2 cut(s) 56, 123
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 1 cut(s) 22
BspANI GGCC 2 cut(s) 56, 123
BspCNI CTCAG 1 cut(s) 4
BspMAI CTGCAG 1 cut(s) 45
BsrDI GCAATG 2 cut(s) 155, 240
BsrI ACTGG 2 cut(s) 121, 154
BssMI GATC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 56, 123
BtsIMutI CAGTG 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 1 cut(s) 246
CviJI RGCY 3 cut(s) 56, 123, 128
CviKI_1 RGCY 3 cut(s) 56, 123, 128
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eco147I AGGCCT 1 cut(s) 56
FaeI CATG 1 cut(s) 249
FaiI YATR 6 cut(s) 66, 138, 180, 189, 247, 270
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 221, 253
FatI CATG 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
GsaI CCCAGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 2 cut(s) 56, 123
Hin1II CATG 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 46, 82
HpyCH4V TGCA 3 cut(s) 43, 182, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 4 cut(s) 102, 135, 138, 174
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 2 cut(s) 226, 229
MflI RGATCY 1 cut(s) 231
MluCI AATT 2 cut(s) 132, 214
MnlI CCTC 3 cut(s) 7, 91, 113
MseI TTAA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeII GATC 1 cut(s) 231
NlaIII CATG 1 cut(s) 249
PceI AGGCCT 1 cut(s) 56
PkrI GCNGC 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 122
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 122
SetI ASST 2 cut(s) 102, 130
SfcI CTRYAG 1 cut(s) 41
SgeI CNNG 7 cut(s) 46, 129, 137, 162, 173, 241, 258
Sse9I AATT 2 cut(s) 132, 214
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 1 cut(s) 22
StuI AGGCCT 1 cut(s) 56
TasI AATT 2 cut(s) 132, 214
TauI GCSGC 1 cut(s) 24
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 144, 229
TspRI CASTG 1 cut(s) 154
XapI RAATTY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.