RchiOBHm_Chr3g0490851

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0021329
Physical Location & Seq
Reverse (-)
37501347 .. 37501682
336 bp
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UTR
Exon/CDS
Intron
PRQ45392

Sequence Viewer

Length: 336 bp
ATGTGGGTTGGAGTACTTGACTTATGGGTCTTTGTTATTCAGGGAAATGCTTCCTCTGGCATGGGTGTTGCTGAGGACTGCTGCAATACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGAAGAAAGAGGTTGTGGTAGAAAAGACTGGAGGCCCAGCTGAAAGTTATGATGATTTCACTGGTTCATTGCCTGAAAATGATTGCCGATATGCAATCTATGACTTTGATTTTGTCACTTCAGAGAATTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGTTTGTTTCTTTTGGTTATTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

111

Amino Acids

12.79

Weight (kDa)

4.76

Isoelectric Point (pI)

23.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 20 - 103 1.2e-21 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021329)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0343061 RchiOBHm_Chr3g0490851
rosa_multiflora Rmu_sc0003545.1_g000013
rosa_roxburghii Rroxscaffold_1G00041390
rosa_samantha Rh1AG137600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 15
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
AoxI GGCC 2 cut(s) 114, 181
ApeKI GCWGC 1 cut(s) 81
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
Asp700I GAANNNNTTC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 101
BglII AGATCT 1 cut(s) 291
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
BmcAI AGTACT 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 181, 214
Bse3DI GCAATG 2 cut(s) 215, 300
BseMI GCAATG 2 cut(s) 215, 300
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 181, 214
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 2 cut(s) 116, 183
BsnI GGCC 2 cut(s) 116, 183
Bsp143I GATC 1 cut(s) 291
BspANI GGCC 2 cut(s) 116, 183
BspCNI CTCAG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 105
BspQI GCTCTTC 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 215, 300
BsrI ACTGG 2 cut(s) 181, 214
BssMI GATC 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 72
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 2 cut(s) 116, 183
BtsIMutI CAGTG 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 61, 306
CviJI RGCY 3 cut(s) 116, 183, 188
CviKI_1 RGCY 3 cut(s) 116, 183, 188
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
DrdI GACNNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 26
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 252
FaeI CATG 2 cut(s) 64, 309
FaiI YATR 8 cut(s) 25, 62, 126, 198, 240, 249, 307, 330
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 281, 313
FatI CATG 2 cut(s) 60, 305
Fnu4HI GCNGC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 116, 183
Hin1II CATG 2 cut(s) 64, 309
Hpy188I TCNGA 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 84, 103, 242, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 2 cut(s) 64, 309
Kzo9I GATC 1 cut(s) 291
LguI GCTCTTC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 26, 42, 162, 195, 198, 234, 293
Lsp1109I GCAGC 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 5 cut(s) 160, 163, 286, 289, 295
MflI RGATCY 1 cut(s) 291
MluCI AATT 1 cut(s) 274
MnlI CCTC 4 cut(s) 64, 67, 151, 173
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 1 cut(s) 291
NlaIII CATG 2 cut(s) 64, 309
NmuCI GTSAC 1 cut(s) 262
PceI AGGCCT 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 291
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 182
ScaI AGTACT 1 cut(s) 15
SetI ASST 2 cut(s) 162, 190
SfcI CTRYAG 1 cut(s) 101
Sse9I AATT 1 cut(s) 274
SseBI AGGCCT 1 cut(s) 116
StuI AGGCCT 1 cut(s) 116
TasI AATT 1 cut(s) 274
TatI WGTACW 1 cut(s) 13
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 204, 289
TspRI CASTG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.