RchiOBHm_Chr1g0343311

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0021865
Physical Location & Seq
Reverse (-)
35275670 .. 35276100
431 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGTCATACGGCTTGGGGATCTACCTTCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTTCGACGGCCCCAGCCTCCCGACCCGCGGATTCGACGAGTTCCGCCCCTTCGTTCGACGCCTCCCCGAGTTTAAATTCTGGTACTCAATTACAAAGGCGTTTTGCATTGCTTTCGTGATGATTTTTTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

72

Amino Acids

8.49

Weight (kDa)

5.59

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 2 - 71 1.2e-26 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021865)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0343311 RchiOBHm_Chr7g0237871
rosa_samantha Rh4BG387700 Rh4CG402300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 109, 111, 127
AclWI GGATC 2 cut(s) 26, 67
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 142
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 110
AlwI GGATC 2 cut(s) 26, 67
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 149
AxyI CCTNAGG 1 cut(s) 57
BceAI ACGGC 2 cut(s) 25, 106
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BcnI CCSGG 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 2 cut(s) 18, 72
BspACI CCGC 3 cut(s) 109, 111, 127
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 2 cut(s) 26, 67
BsrDI GCAATG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 18, 72
BssNI GRCGYC 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 2 cut(s) 21, 75
BstMBI GATC 2 cut(s) 18, 72
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 18, 72
BstYI RGATCY 2 cut(s) 18, 72
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 92
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 166
CviJI RGCY 4 cut(s) 12, 45, 93, 99
CviKI_1 RGCY 4 cut(s) 12, 45, 93, 99
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 20, 74
DpnII GATC 2 cut(s) 18, 72
DraI TTTAAA 1 cut(s) 157
EciI GGCGGA 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 149
FaiI YATR 1 cut(s) 7
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 2 cut(s) 103, 199
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 3 cut(s) 92, 122, 144
HpyAV CCTTC 2 cut(s) 35, 142
HpyCH4V TGCA 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 142
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 2 cut(s) 18, 72
LpnPI CCDG 4 cut(s) 44, 81, 109, 148
MalI GATC 2 cut(s) 20, 74
MboI GATC 2 cut(s) 18, 72
MflI RGATCY 2 cut(s) 18, 72
MluCI AATT 2 cut(s) 158, 171
MnlI CCTC 3 cut(s) 66, 110, 155
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 111
NciI CCSGG 1 cut(s) 68
NdeII GATC 2 cut(s) 18, 72
NlaIV GGNNCC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 92
PsuI RGATCY 2 cut(s) 18, 72
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SacII CCGCGG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 2 cut(s) 18, 72
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 68
SetI ASST 3 cut(s) 27, 63, 84
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
Sse9I AATT 2 cut(s) 158, 171
SsiI CCGC 3 cut(s) 109, 111, 127
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 4 cut(s) 63, 87, 117, 139
TasI AATT 2 cut(s) 158, 171
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.