RchiOBHm_Chr7g0237871

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0021865
Physical Location & Seq
Forward (+)
63050819 .. 63051203
385 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21318

Sequence Viewer

Length: 168 bp
ATGTCATACGGCTTGGGGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCTCTCCTCAGGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCAGCCTCCCGACCCGTGGATCAGACGAGTTCCGCCCCTTCGTTCGACTCCTCCCCGAGTTTAAATTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

55

Amino Acids

6.3

Weight (kDa)

4.65

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 2 - 55 2.9e-20 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021865)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0343311 RchiOBHm_Chr7g0237871
rosa_samantha Rh4BG387700 Rh4CG402300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 127
AclWI GGATC 3 cut(s) 26, 67, 121
AcsI RAATTY 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 110
AlwI GGATC 3 cut(s) 26, 67, 121
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 149
AxyI CCTNAGG 1 cut(s) 57
BceAI ACGGC 2 cut(s) 25, 106
BcnI CCSGG 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse21I CCTNAGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 3 cut(s) 17, 45, 134
BseYI CCCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 3 cut(s) 18, 72, 113
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 3 cut(s) 26, 67, 121
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 18, 72, 113
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 109
BstKTI GATC 3 cut(s) 21, 75, 116
BstMBI GATC 3 cut(s) 18, 72, 113
BstSCI CCNGG 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 18, 72
BstYI RGATCY 2 cut(s) 18, 72
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 92
CviJI RGCY 4 cut(s) 12, 45, 93, 99
CviKI_1 RGCY 4 cut(s) 12, 45, 93, 99
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 20, 74, 115
DpnII GATC 3 cut(s) 18, 72, 113
DraI TTTAAA 1 cut(s) 157
EciI GGCGGA 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 149
FaiI YATR 1 cut(s) 7
FblI GTMKAC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 88, 118
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 57
Kzo9I GATC 3 cut(s) 18, 72, 113
LpnPI CCDG 4 cut(s) 44, 81, 109, 148
MalI GATC 3 cut(s) 20, 74, 115
MboI GATC 3 cut(s) 18, 72, 113
MflI RGATCY 2 cut(s) 18, 72
MluCI AATT 1 cut(s) 158
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 5 cut(s) 35, 38, 66, 110, 155
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 68
NciI CCSGG 1 cut(s) 68
NdeII GATC 3 cut(s) 18, 72, 113
NlaIV GGNNCC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 92
PsuI RGATCY 2 cut(s) 18, 72
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 3 cut(s) 18, 72, 113
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 68
SetI ASST 3 cut(s) 27, 63, 84
Sse9I AATT 1 cut(s) 158
SsiI CCGC 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 2 cut(s) 63, 139
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.