Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024777

Physical Location & Seq

Genomic Coordinates Forward (+)

37596490 .. 37596648

Gene Structure 159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGCTCATCATCTCTATAATGGCGACTGGAGATTTGTTGCTAAAACTTCTGAGGATGCGTATAAGTTACTATACTTGATAGCAACATACAATAAACCCCAAGTTTCAGTTCTCAATGGAATTTCCTTAGGTGGATCCGCAATTAGTAGATCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

52

Amino Acids

5.76

Weight (kDa)

8.93

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	8 - 45	4.3e-07	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0024777)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345211
rosa_multiflora	Rmu_sc0010770.1_g000002
rosa_samantha	Rh1BG161000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	3 cut(s)	129, 142, 144
AcsI	RAATTY	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AlwI	GGATC	3 cut(s)	129, 142, 144
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AxyI	CCTNAGG	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	136
BmsI	GCATC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	32
Bse21I	CCTNAGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	134, 149
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	3 cut(s)	129, 142, 144
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	134, 149
BstDEI	CTNAG	2 cut(s)	51, 127
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	2 cut(s)	137, 152
BstMBI	GATC	2 cut(s)	134, 149
BstX2I	RGATCY	2 cut(s)	134, 149
BstYI	RGATCY	2 cut(s)	134, 149
Bsu36I	CCTNAGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	61
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
DdeI	CTNAG	2 cut(s)	51, 127
DpnI	GATC	2 cut(s)	136, 151
DpnII	GATC	2 cut(s)	134, 149
Eco81I	CCTNAGG	1 cut(s)	127
FaiI	YATR	4 cut(s)	18, 63, 73, 88
FokI	GGATG	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	51, 127
Kzo9I	GATC	2 cut(s)	134, 149
LpnPI	CCDG	1 cut(s)	13
LweI	GCATC	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	2 cut(s)	136, 151
MboI	GATC	2 cut(s)	134, 149
MflI	RGATCY	2 cut(s)	134, 149
MluCI	AATT	2 cut(s)	120, 141
MnlI	CCTC	1 cut(s)	46
NdeII	GATC	2 cut(s)	134, 149
NlaIV	GGNNCC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	134, 149
Sau3AI	GATC	2 cut(s)	134, 149
SetI	ASST	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	46
SgeI	CNNG	3 cut(s)	40, 88, 113
Sse9I	AATT	2 cut(s)	120, 141
SsiI	CCGC	1 cut(s)	138
TasI	AATT	2 cut(s)	120, 141
XapI	RAATTY	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.