Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0024777

Physical Location & Seq

Genomic Coordinates Forward (+)

25979599 .. 25979895

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG161000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCTCGTCATCTCTATAGTGGCGACTGGAGATTTGTTGCTAAAACTTCTGAGGATGCGTATAAATTACTATACTTGATAGCAACATACAGTAAACCCCAGGTTTCAGTTCTCAATGGAATTTCCTTGGGACGTGGAGCAGCAATTAGTATATCCTGTAGATTCCGTATTGCAAGTTTGCAACTGAGAATTCAATGTTTTCTATGCCAGAAACAGCTTTGGGAGGGTTTCCTGATGCGGGTGCCTCTTACTTCTTGTCAAGGCTTCCTGGATTCTTTGGAGAATATGTTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

98

Amino Acids

11.11

Weight (kDa)

9.3

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	10 - 60	1.6e-11	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024777)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345211
rosa_multiflora	Rmu_sc0010770.1_g000002
rosa_samantha	Rh1BG161000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AciI	CCGC	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	120, 189
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	194
AjiI	CACGTC	1 cut(s)	134
AjnI	CCWGG	2 cut(s)	99, 267
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	120, 189
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
BanI	GGYRCC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	101, 269
BfmI	CTRYAG	2 cut(s)	16, 157
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	101, 269
BmgBI	CACGTC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	101, 269
BmsI	GCATC	2 cut(s)	46, 225
BpmI	CTGGAG	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	99, 126
BsaXI	ACNNNNNCTCC	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	101, 269
BseDI	CCNNGG	2 cut(s)	99, 126
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	42, 176
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	293
BshNI	GGYRCC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	293
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	43, 177
BspLI	GGNNCC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	99, 126
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	101, 269
Bst4CI	ACNGT	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	51, 185
BstF5I	GGATG	1 cut(s)	61
BstNI	CCWGG	2 cut(s)	101, 269
BstSCI	CCNGG	2 cut(s)	99, 267
BstSFI	CTRYAG	2 cut(s)	16, 157
BstV1I	GCAGC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	293
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	61
CviJI	RGCY	4 cut(s)	5, 217, 264, 293
CviKI_1	RGCY	4 cut(s)	5, 217, 264, 293
DdeI	CTNAG	2 cut(s)	51, 185
Eco130I	CCWWGG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	99, 267
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaiI	YATR	7 cut(s)	18, 63, 73, 88, 152, 205, 287
FaqI	GGGAC	1 cut(s)	144
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	162, 272
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	173, 181
HpyF3I	CTNAG	2 cut(s)	51, 185
HpySE526I	ACGT	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	8 cut(s)	13, 86, 113, 169, 221, 245, 254, 281
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	2 cut(s)	46, 225
MaeII	ACGT	1 cut(s)	133
MluCI	AATT	4 cut(s)	65, 120, 144, 189
MnlI	CCTC	3 cut(s)	46, 217, 255
MspR9I	CCNGG	2 cut(s)	101, 269
MvaI	CCWGG	2 cut(s)	101, 269
NlaIV	GGNNCC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	162, 272
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	99, 267
PspGI	CCWGG	2 cut(s)	99, 267
PspN4I	GGNNCC	1 cut(s)	243
SatI	GCNGC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	101, 269
SetI	ASST	3 cut(s)	105, 136, 219
SfaNI	GCATC	2 cut(s)	46, 225
SfcI	CTRYAG	2 cut(s)	16, 157
Sse9I	AATT	4 cut(s)	65, 120, 144, 189
SsiI	CCGC	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	99, 267
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	136
TasI	AATT	4 cut(s)	65, 120, 144, 189
TfiI	GAWTC	2 cut(s)	162, 272
TseI	GCWGC	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	155
XapI	RAATTY	2 cut(s)	120, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.