Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010770.1

Orthogroup ID

OG0024777

Physical Location & Seq

Genomic Coordinates Reverse (-)

11709 .. 12954

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010770.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggcaggaagactgagcagtgtggcgtccaaaatcatgggcgaaatggcgtcgtctgtcccctcctctcattgttccgcactggcatgggcctccctatcggaaaacacatcttctgagctattcctcaccctagagtatgatgccaaagtcaagttggtcattcccaaaggtaacagaaaagcattttgcaccagtggtgatgtagctgctagggctcatcatctctataatggcgacttgagatttgttgctaaaacttctgaggttgcgtataagttactatacttgatagcaacatacagtaaaccccaggtttcagttctcaatggaatttccttaggtggatccgcaattagtagatcctgtagatttcgtattgcaactgagaattcaatgttttctatgccagctttgggaaacagcgctagctttgggagggtttatcgaaggaggtcggcagcagtaatgatttggtctgtggtcgagtcgcagcagaacacctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

169

Amino Acids

18.24

Weight (kDa)

9.79

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024777)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345211
rosa_multiflora	Rmu_sc0010770.1_g000002
rosa_samantha	Rh1BG161000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	78, 351
AclWI	GGATC	3 cut(s)	342, 355, 357
AcsI	RAATTY	2 cut(s)	333, 391
AcyI	GRCGYC	2 cut(s)	26, 50
AfeI	AGCGCT	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	1 cut(s)	396
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	121, 209, 413, 432
AluI	AGCT	4 cut(s)	121, 209, 413, 432
AlwI	GGATC	3 cut(s)	342, 355, 357
Aor51HI	AGCGCT	1 cut(s)	427
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	209, 461, 493
ApoI	RAATTY	2 cut(s)	333, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	121, 212
AsuNHI	GCTAGC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	196, 473, 505
BciT130I	CCWGG	1 cut(s)	314
BfaI	CTAG	3 cut(s)	134, 213, 429
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	429
BisI	GCNGC	3 cut(s)	210, 462, 494
BlsI	GCNGC	3 cut(s)	211, 463, 495
Bme1390I	CCNGG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	133
BmtI	GCTAGC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	262
BsaHI	GRCGYC	2 cut(s)	26, 50
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	2 cut(s)	87, 195
Bse21I	CCTNAGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	4 cut(s)	5, 108, 255, 378
BseNI	ACTGG	2 cut(s)	87, 195
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	196, 473, 505
BshFI	GGCC	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	347, 362
BspACI	CCGC	2 cut(s)	78, 351
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	4 cut(s)	6, 109, 256, 379
BspLI	GGNNCC	1 cut(s)	349
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	3 cut(s)	342, 355, 357
BsrI	ACTGG	2 cut(s)	87, 195
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	347, 362
BssNI	GRCGYC	2 cut(s)	26, 50
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	305
BstACI	GRCGYC	2 cut(s)	26, 50
BstC8I	GCNNGC	2 cut(s)	411, 430
BstDEI	CTNAG	5 cut(s)	14, 117, 264, 340, 387
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	2 cut(s)	350, 365
BstMBI	GATC	2 cut(s)	347, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	196, 473, 505
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	2 cut(s)	347, 362
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	2 cut(s)	347, 362
Bsu36I	CCTNAGG	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	25, 80, 202
Cac8I	GCNNGC	2 cut(s)	411, 430
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	2 cut(s)	15, 39
CviAII	CATG	2 cut(s)	37, 87
CviJI	RGCY	6 cut(s)	92, 121, 209, 218, 413, 432
CviKI_1	RGCY	6 cut(s)	92, 121, 209, 218, 413, 432
DdeI	CTNAG	5 cut(s)	14, 117, 264, 340, 387
DpnI	GATC	2 cut(s)	349, 364
DpnII	GATC	2 cut(s)	347, 362
Eco24I	GRGCYC	1 cut(s)	220
Eco47III	AGCGCT	1 cut(s)	427
Eco81I	CCTNAGG	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	2 cut(s)	40, 90
FaiI	YATR	8 cut(s)	38, 88, 141, 231, 276, 286, 301, 407
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	2 cut(s)	36, 86
Fnu4HI	GCNGC	3 cut(s)	210, 462, 494
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	210, 462, 494
FspBI	CTAG	3 cut(s)	134, 213, 429
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	210, 462, 494
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	92
HgaI	GACGC	2 cut(s)	15, 39
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	2 cut(s)	26, 50
Hin1II	CATG	2 cut(s)	40, 90
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	1 cut(s)	488
HphI	GGTGA	2 cut(s)	121, 212
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	103, 118, 265
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	192, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	5 cut(s)	14, 117, 264, 340, 387
Hsp92I	GRCGYC	2 cut(s)	26, 50
Hsp92II	CATG	2 cut(s)	40, 90
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	347, 362
LpnPI	CCDG	6 cut(s)	68, 208, 299, 326, 379, 423
Lsp1109I	GCAGC	3 cut(s)	196, 473, 505
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	134, 213, 429
MaeIII	GTNAC	2 cut(s)	173, 279
MalI	GATC	2 cut(s)	349, 364
MboI	GATC	2 cut(s)	347, 362
MboII	GAAGA	2 cut(s)	21, 105
MflI	RGATCY	2 cut(s)	347, 362
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	3 cut(s)	333, 354, 391
MlyI	GAGTC	1 cut(s)	497
MnlI	CCTC	7 cut(s)	73, 76, 103, 137, 259, 432, 447
MseI	TTAA	1 cut(s)	508
MslI	CAYNNNNRTG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	347, 362
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	2 cut(s)	40, 90
NlaIV	GGNNCC	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	211, 463, 495
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	90
PsuI	RGATCY	2 cut(s)	347, 362
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	508
SatI	GCNGC	3 cut(s)	210, 462, 494
Sau3AI	GATC	2 cut(s)	347, 362
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	3 cut(s)	333, 354, 391
SsiI	CCGC	2 cut(s)	78, 351
SspMI	CTAG	3 cut(s)	134, 213, 429
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	448, 486
TasI	AATT	3 cut(s)	333, 354, 391
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TscAI	CASTG	3 cut(s)	25, 87, 202
TseI	GCWGC	3 cut(s)	209, 461, 493
TspRI	CASTG	3 cut(s)	25, 87, 202
XapI	RAATTY	2 cut(s)	333, 391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	3 cut(s)	134, 213, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.