RchiOBHm_Chr1g0347731

COP9 signalosome complex subunit 7-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
40412681 .. 40415431
2751 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 153 bp
ATGATTGGAAGATTTTTCTGTATAATGGCATTTGTTCTTATGTCACTGGATTTTGTGCAGCTTGAAGGAACAGAGAATGCTGTGTACCTGGATGTGCTTCGTCTGTTTGCACACGGCACATGGAGTGATTACAAGACTATTCATGTGACGTAA

Protein Analysis

50

Amino Acids

5.8

Weight (kDa)

5.34

Isoelectric Point (pI)

16.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024681)

Species Orthologous Gene IDs
pyrus_communis pycom11g18120
rosa_chinensis RchiOBHm_Chr1g0347731
rosa_samantha Rh3CG356900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 89
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 77
BsmI GAATGC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 97
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 44
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 120, 143
CviJI RGCY 1 cut(s) 61
CviKI_1 RGCY 1 cut(s) 61
CviQI GTAC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 123, 146
FaiI YATR 4 cut(s) 23, 41, 121, 144
FatI CATG 2 cut(s) 119, 142
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 59
FspEI CC 7 cut(s) 11, 32, 51, 74, 99, 101, 106
GluI GCNGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 123, 146
Hpy166II GTNNAC 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 58, 110
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 123, 146
LpnPI CCDG 3 cut(s) 32, 74, 101
Lsp1109I GCAGC 1 cut(s) 70
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 42, 145
MboII GAAGA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 82
MvaI CCWGG 1 cut(s) 89
NlaIII CATG 2 cut(s) 123, 146
NmuCI GTSAC 2 cut(s) 42, 145
PctI GAATGC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 89
SetI ASST 3 cut(s) 63, 90, 152
SgeI CNNG 7 cut(s) 59, 74, 100, 101, 125, 132, 145
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 152
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 2 cut(s) 42, 145
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 2 cut(s) 42, 145
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.