RchiOBHm_Chr1g0351881

Peroxisome biogenesis protein 16-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
45058759 .. 45059016
258 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGGAGCCTCCAAGTAACTACTCATATACACACTGGGATAAGTGTAATTACAATTTATTTTCTGTTATTACAAGATTTTATTTTCTCACAGCTTCAGTGGTTGAGAGCTTGACTCTATCCACCATATTGTCCGAAAAGGGTCTCCATGGGGCTTTGTATGTGGCTGGGGAAGTGCTATTTATAACAAGACCACTTATTTATGTTTTATTTATTTGA

Protein Analysis

71

Amino Acids

8.15

Weight (kDa)

6.01

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022614)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0351881
rosa_multiflora Rmu_sc0032602.1_g000005
rosa_samantha Rh1AG236400 Rh1CG220900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 78
AluBI AGCT 2 cut(s) 92, 108
AluI AGCT 2 cut(s) 92, 108
Alw26I GTCTC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 146
Bsp19I CCATGG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 145
BstDSI CCRYGG 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 31, 102
CviAII CATG 1 cut(s) 146
CviJI RGCY 5 cut(s) 7, 92, 108, 152, 164
CviKI_1 RGCY 5 cut(s) 7, 92, 108, 152, 164
Eco130I CCWWGG 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 149
FaiI YATR 7 cut(s) 25, 27, 125, 147, 159, 182, 201
FatI CATG 1 cut(s) 145
GsaI CCCAGC 1 cut(s) 168
Hin1II CATG 1 cut(s) 149
HinfI GANTC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 133
Hsp92II CATG 1 cut(s) 149
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 19, 150
MaeIII GTNAC 1 cut(s) 14
MluCI AATT 2 cut(s) 46, 52
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 145
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 6
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 106
SetI ASST 2 cut(s) 94, 110
SgeI CNNG 7 cut(s) 24, 46, 84, 121, 158, 177, 198
Sse9I AATT 2 cut(s) 46, 52
StyI CCWWGG 1 cut(s) 145
TasI AATT 2 cut(s) 46, 52
TscAI CASTG 2 cut(s) 38, 102
TspRI CASTG 2 cut(s) 38, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.