Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0022614

Physical Location & Seq

Genomic Coordinates Reverse (-)

47123591 .. 47124091

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG220900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAGCCTGGAGAGCAGCGTGGAAATGGTCACTTGATAAATAATCATGCACAGGATCCATGGAATTTAGAAGGAAGAGCACTATCTGCATTGAATAGGTTTGGAGAAAAGGCTAGGACTGTTTCAGATCCAGTATGGTTGCATCGGGTTCAACAACAGCATGCCATTATGGAGCCTCCAAGTAACTACTCATATACACACTGGGATAAGTGTAATTACAATTTATTTTCTGTTATTACAAGATTTTATTTTCTCACAGCTTCAGTGGTTGAGAGCTTGACTCTATCCACCATATTGTCCGAAAAGGGTGTCCATGGGGCTTTGTATGTGGCTGGGGAAGTGCTATTTATAACAAGACCACTTATTTATGTTTTATTTATTCGAATATGGAGCTTGCTCCTGGATTCTGTGGTTTCTTTCGCTGGCTTTGGACTTCACTGGAATGGGCATTCTATCTCAAAGTACTTCGTACACAGGTGGTACAAAAGAGCAGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

166

Amino Acids

19.09

Weight (kDa)

9.48

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex16	PF08610	14 - 131	7.3e-07	Peroxisomal membrane protein (Pex16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0022614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351881
rosa_multiflora	Rmu_sc0032602.1_g000005
rosa_samantha	Rh1AG236400 Rh1CG220900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AclWI	GGATC	3 cut(s)	50, 63, 122
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	3 cut(s)	464, 471, 482
AgsI	TTSAA	2 cut(s)	94, 152
AjnI	CCWGG	2 cut(s)	7, 399
AluBI	AGCT	3 cut(s)	260, 276, 393
AluI	AGCT	3 cut(s)	260, 276, 393
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	50, 63, 122
ApeKI	GCWGC	2 cut(s)	16, 491
ApoI	RAATTY	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AsuII	TTCGAA	1 cut(s)	382
BamHI	GGATCC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	9, 401
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	17, 492
BlsI	GCNGC	2 cut(s)	18, 493
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	9, 401
BmiI	GGNNCC	2 cut(s)	57, 174
BmrFI	CCNGG	2 cut(s)	9, 401
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	59, 313
Bse1I	ACTGG	3 cut(s)	131, 206, 443
BseBI	CCWGG	2 cut(s)	9, 401
BseDI	CCNNGG	2 cut(s)	59, 313
BseNI	ACTGG	3 cut(s)	131, 206, 443
BseXI	GCAGC	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	448
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	55, 127
Bsp19I	CCATGG	2 cut(s)	59, 313
BspLI	GGNNCC	2 cut(s)	57, 174
BspPI	GGATC	3 cut(s)	50, 63, 122
BspQI	GCTCTTC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	131, 206, 443
BssECI	CCNNGG	2 cut(s)	59, 313
BssMI	GATC	2 cut(s)	55, 127
BssT1I	CCWWGG	2 cut(s)	59, 313
Bst2UI	CCWGG	2 cut(s)	9, 401
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	162, 395, 424
BstDSI	CCRYGG	2 cut(s)	59, 313
BstKTI	GATC	2 cut(s)	58, 130
BstMBI	GATC	2 cut(s)	55, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 86
BstNI	CCWGG	2 cut(s)	9, 401
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	7, 399
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	55, 127
BstYI	RGATCY	2 cut(s)	55, 127
BtgI	CCRYGG	2 cut(s)	59, 313
BtsIMutI	CAGTG	3 cut(s)	199, 270, 436
Cac8I	GCNNGC	3 cut(s)	162, 395, 424
Csp6I	GTAC	3 cut(s)	463, 470, 481
CviAII	CATG	4 cut(s)	47, 60, 161, 314
CviJI	RGCY	9 cut(s)	7, 113, 175, 260, 276, 320, 332, 393, 426
CviKI_1	RGCY	9 cut(s)	7, 113, 175, 260, 276, 320, 332, 393, 426
CviQI	GTAC	3 cut(s)	463, 470, 481
DpnI	GATC	2 cut(s)	57, 129
DpnII	GATC	2 cut(s)	55, 127
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	59, 313
Eco57I	CTGAAG	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	7, 399
EcoT14I	CCWWGG	2 cut(s)	59, 313
ErhI	CCWWGG	2 cut(s)	59, 313
FaeI	CATG	4 cut(s)	50, 63, 164, 317
FatI	CATG	4 cut(s)	46, 59, 160, 313
Fnu4HI	GCNGC	2 cut(s)	17, 492
Fsp4HI	GCNGC	2 cut(s)	17, 492
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	17, 492
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	30
Hin1II	CATG	4 cut(s)	50, 63, 164, 317
HinfI	GANTC	2 cut(s)	280, 404
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	127, 301
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	50, 89, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 86
Hsp92II	CATG	4 cut(s)	50, 63, 164, 317
Kzo9I	GATC	2 cut(s)	55, 127
LguI	GCTCTTC	1 cut(s)	70
LmnI	GCTCC	3 cut(s)	172, 390, 402
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	29, 182
MalI	GATC	2 cut(s)	57, 129
MboI	GATC	2 cut(s)	55, 127
MboII	GAAGA	1 cut(s)	87
MflI	RGATCY	2 cut(s)	55, 127
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	3 cut(s)	64, 214, 220
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	499
MslI	CAYNNNNRTG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	9, 401
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	9, 401
MwoI	GCNNNNNNNGC	2 cut(s)	13, 86
NcoI	CCATGG	2 cut(s)	59, 313
NdeII	GATC	2 cut(s)	55, 127
NlaIII	CATG	4 cut(s)	50, 63, 164, 317
NlaIV	GGNNCC	2 cut(s)	57, 174
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	70
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	18, 493
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	7, 399
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	2 cut(s)	7, 399
PspN4I	GGNNCC	2 cut(s)	57, 174
PsuI	RGATCY	2 cut(s)	55, 127
RsaI	GTAC	3 cut(s)	464, 471, 482
RsaNI	GTAC	3 cut(s)	463, 470, 481
RseI	CAYNNNNRTG	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	2 cut(s)	17, 492
Sau3AI	GATC	2 cut(s)	55, 127
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	9, 401
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	5 cut(s)	101, 262, 278, 395, 479
SfaNI	GCATC	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	441
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	3 cut(s)	64, 214, 220
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	7, 399
StyI	CCWWGG	2 cut(s)	59, 313
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	382
TasI	AATT	3 cut(s)	64, 214, 220
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TscAI	CASTG	3 cut(s)	206, 270, 443
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	16, 491
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	206, 270, 443
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.