Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032602.1

Orthogroup ID

OG0022614

Physical Location & Seq

Genomic Coordinates Forward (+)

3450 .. 4025

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032602.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgcttctccatggaggagagacaccatatgatgaaaaaaatgcctcaacttctcagcgtagaagtggtggttttatgaagcctggcgagcagcgtggaaatggtcacttgataaataatcatgcacaggatccatggaatttagaaggaagagcactatctgcattgaataggtttggagaaaaggctaggactgtttcagatccagtatggttgcatcgggttcaacaacagcatgccattatggagcctccaagtaactactcatatacacactgggataagtgtaattacaatttattttctgttattacaagattttattttctcacagcttcagtggttgagagcttgactctatccaccatattgtccgaaaagggtgtccatggggctttgtatgtggctggggaagtgctatttataacaagaccacttatttatgttttatttattcgaatatggagcttgctcctggattctgtggtttctttcactggctttggacttcactggaatgggcgttctatctcaaattacttcgtacacaggtggtacaaaagagcagcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

191

Amino Acids

21.85

Weight (kDa)

9.44

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351881
rosa_multiflora	Rmu_sc0032602.1_g000005
rosa_samantha	Rh1AG236400 Rh1CG220900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AclWI	GGATC	3 cut(s)	125, 138, 197
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	546, 557
AgsI	TTSAA	2 cut(s)	169, 227
AjnI	CCWGG	2 cut(s)	82, 474
AloI	GAACNNNNNNTCC	2 cut(s)	508, 540
AluBI	AGCT	3 cut(s)	335, 351, 468
AluI	AGCT	3 cut(s)	335, 351, 468
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	125, 138, 197
ApeKI	GCWGC	2 cut(s)	91, 566
ApoI	RAATTY	1 cut(s)	139
ArsI	GACNNNNNNTTYG	2 cut(s)	369, 401
AsuII	TTCGAA	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	84, 476
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	92, 567
BlsI	GCNGC	2 cut(s)	93, 568
Bme1390I	CCNGG	2 cut(s)	84, 476
BmiI	GGNNCC	2 cut(s)	132, 249
BmrFI	CCNGG	2 cut(s)	84, 476
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
Bpu14I	TTCGAA	1 cut(s)	457
BsaJI	CCNNGG	3 cut(s)	10, 134, 388
Bse1I	ACTGG	4 cut(s)	206, 281, 502, 518
BseBI	CCWGG	2 cut(s)	84, 476
BseDI	CCNNGG	3 cut(s)	10, 134, 388
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	4 cut(s)	206, 281, 502, 518
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	130, 202
Bsp19I	CCATGG	3 cut(s)	10, 134, 388
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	132, 249
BspPI	GGATC	3 cut(s)	125, 138, 197
BspQI	GCTCTTC	1 cut(s)	145
BspT104I	TTCGAA	1 cut(s)	457
BsrI	ACTGG	4 cut(s)	206, 281, 502, 518
BssECI	CCNNGG	3 cut(s)	10, 134, 388
BssMI	GATC	2 cut(s)	130, 202
BssT1I	CCWWGG	3 cut(s)	10, 134, 388
Bst2UI	CCWGG	2 cut(s)	84, 476
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	457
BstC8I	GCNNGC	3 cut(s)	89, 237, 470
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	3 cut(s)	10, 134, 388
BstKTI	GATC	2 cut(s)	133, 205
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	130, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 161
BstNI	CCWGG	2 cut(s)	84, 476
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	82, 474
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	130, 202
BstYI	RGATCY	2 cut(s)	130, 202
BtgI	CCRYGG	3 cut(s)	10, 134, 388
BtsIMutI	CAGTG	4 cut(s)	274, 345, 495, 511
Cac8I	GCNNGC	3 cut(s)	89, 237, 470
Csp6I	GTAC	2 cut(s)	545, 556
CviAII	CATG	5 cut(s)	11, 122, 135, 236, 389
CviJI	RGCY	9 cut(s)	82, 188, 250, 335, 351, 395, 407, 468, 501
CviKI_1	RGCY	9 cut(s)	82, 188, 250, 335, 351, 395, 407, 468, 501
CviQI	GTAC	2 cut(s)	545, 556
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	132, 204
DpnII	GATC	2 cut(s)	130, 202
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco130I	CCWWGG	3 cut(s)	10, 134, 388
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	82, 474
EcoT14I	CCWWGG	3 cut(s)	10, 134, 388
ErhI	CCWWGG	3 cut(s)	10, 134, 388
FaeI	CATG	5 cut(s)	14, 125, 138, 239, 392
FatI	CATG	5 cut(s)	10, 121, 134, 235, 388
FauNDI	CATATG	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	92, 567
Fsp4HI	GCNGC	2 cut(s)	92, 567
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	2 cut(s)	92, 567
GsaI	CCCAGC	1 cut(s)	411
Hin1II	CATG	5 cut(s)	14, 125, 138, 239, 392
HinfI	GANTC	2 cut(s)	355, 479
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	2 cut(s)	202, 376
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	125, 164, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 161
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	14, 125, 138, 239, 392
Kzo9I	GATC	2 cut(s)	130, 202
LguI	GCTCTTC	1 cut(s)	145
LmnI	GCTCC	3 cut(s)	247, 465, 477
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	104, 257
MalI	GATC	2 cut(s)	132, 204
MboI	GATC	2 cut(s)	130, 202
MboII	GAAGA	1 cut(s)	162
MflI	RGATCY	2 cut(s)	130, 202
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	4 cut(s)	139, 289, 295, 535
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	3 cut(s)	8, 55, 261
MseI	TTAA	1 cut(s)	574
MslI	CAYNNNNRTG	1 cut(s)	516
MspR9I	CCNGG	2 cut(s)	84, 476
MvaI	CCWGG	2 cut(s)	84, 476
MwoI	GCNNNNNNNGC	2 cut(s)	88, 161
NcoI	CCATGG	3 cut(s)	10, 134, 388
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	2 cut(s)	130, 202
NlaIII	CATG	5 cut(s)	14, 125, 138, 239, 392
NlaIV	GGNNCC	2 cut(s)	132, 249
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	479
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	2 cut(s)	93, 568
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PsiI	TTATAA	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	82, 474
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	82, 474
PspN4I	GGNNCC	2 cut(s)	132, 249
PsuI	RGATCY	2 cut(s)	130, 202
RsaI	GTAC	2 cut(s)	546, 557
RsaNI	GTAC	2 cut(s)	545, 556
RseI	CAYNNNNRTG	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	574
SatI	GCNGC	2 cut(s)	92, 567
Sau3AI	GATC	2 cut(s)	130, 202
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	84, 476
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	5 cut(s)	176, 337, 353, 470, 554
SfaNI	GCATC	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	516
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	4 cut(s)	139, 289, 295, 535
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	82, 474
StyI	CCWWGG	3 cut(s)	10, 134, 388
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	457
TasI	AATT	4 cut(s)	139, 289, 295, 535
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	574
Tru9I	TTAA	1 cut(s)	574
TscAI	CASTG	4 cut(s)	281, 345, 502, 518
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	91, 566
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	48, 92
TspRI	CASTG	4 cut(s)	281, 345, 502, 518
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.