Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029697

Physical Location & Seq

Genomic Coordinates Forward (+)

50043547 .. 50043705

Gene Structure 159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGATCAACTTGGGTGATGGAGTTGGTGATTATTGCCCTAGCTTGAAGCTGAGGGAAGGAGATTTTGTGATGCCAAGGAAGAATTTCCCGCTTTTCGATAAGATTTGCCAGAACCCTCTGGCTCTTAAGGCTAAGATTCATGAGTGGACTGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

52

Amino Acids

5.89

Weight (kDa)

6.52

Isoelectric Point (pI)

12.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	1 - 52	2.8e-18	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0029697)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357721
rosa_rugosa	Rorug02G0383600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	2 cut(s)	42, 49
AluI	AGCT	2 cut(s)	42, 49
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	26, 38
BbvCI	CCTCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	11, 146
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
BseDI	CCNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	74
BstAFI	CTTAAG	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	50, 132
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	128
CciI	TCATGA	1 cut(s)	139
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	4 cut(s)	42, 49, 122, 131
CviKI_1	RGCY	4 cut(s)	42, 49, 122, 131
DdeI	CTNAG	2 cut(s)	50, 132
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	1 cut(s)	143
FaiI	YATR	1 cut(s)	141
FatI	CATG	1 cut(s)	139
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	3
FspBI	CTAG	1 cut(s)	39
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	2 cut(s)	26, 38
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	50, 132
Hsp92II	CATG	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	2 cut(s)	104, 122
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	1 cut(s)	82
MnlI	CCTC	2 cut(s)	45, 126
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	143
PagI	TCATGA	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	2 cut(s)	44, 51
SfaNI	GCATC	1 cut(s)	60
SgeI	CNNG	8 cut(s)	22, 51, 55, 87, 100, 121, 131, 152
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	74
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.