Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0029697

Physical Location & Seq

Genomic Coordinates Forward (+)

48966716 .. 48968929

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0383600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACGGCGGCAACTGCAGCAGCAACTTCTGGAGCCCCCAAGCTCCTCCTCCGGTTCAGCAGCTACTCCTCTTCCGGGCCTCAAAACAACTTCATGGGCTCCAGAACAGTTGCCATCCACATCCCAGATTGCTTCTCTTCCCCGAGGGCCAAAGGGTCTTTCCCCATCCTAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGCAGAAGAGAATTCAAGCATCGTTAACAACACCACCGGTTTCAACTCTCAGAACGATTTGGAATATTTGGGGAAGGTGCTAGCTGGTTCTATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATACTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCTCTTATTATGATATTTACTCCTGTCATTATAGCTACTTTACTTCTGATCAAACAAAGTCGTGCAAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

146

Amino Acids

15.67

Weight (kDa)

8.89

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029697)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357721
rosa_rugosa	Rorug02G0383600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	219, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	6 cut(s)	43, 63, 173, 287, 308, 401
AluI	AGCT	6 cut(s)	43, 63, 173, 287, 308, 401
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	77, 147
ApeKI	GCWGC	4 cut(s)	17, 20, 60, 324
ApoI	RAATTY	1 cut(s)	214
AsiGI	ACCGGT	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	77, 147
AsuC2I	CCSGG	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	37, 101
BbvI	GCAGC	4 cut(s)	29, 32, 72, 336
BccI	CCATC	2 cut(s)	122, 173
BceAI	ACGGC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	2 cut(s)	170, 284
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	5 cut(s)	9, 18, 21, 61, 325
BlsI	GCNGC	5 cut(s)	10, 19, 22, 62, 326
Bme1390I	CCNGG	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	77, 147
BmiI	GGNNCC	2 cut(s)	34, 100
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	231
BmtI	GCTAGC	1 cut(s)	287
BpmI	CTGGAG	2 cut(s)	51, 85
BpuMI	CCSGG	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	143
BsaWI	WCCGGW	2 cut(s)	51, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	3 cut(s)	114, 120, 165
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	266, 330
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	3 cut(s)	35, 38, 58
BseXI	GCAGC	4 cut(s)	29, 32, 72, 336
BshFI	GGCC	2 cut(s)	79, 149
BshTI	ACCGGT	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	3 cut(s)	52, 75, 240
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	2 cut(s)	79, 149
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	37, 101
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	79, 149
BspCNI	CTCAG	2 cut(s)	265, 331
BspLI	GGNNCC	2 cut(s)	34, 100
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	76, 142, 204
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	252, 339
BstF5I	GGATG	3 cut(s)	114, 120, 165
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 17
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	4 cut(s)	29, 32, 72, 336
BsuRI	GGCC	2 cut(s)	79, 149
BtsCI	GGATG	3 cut(s)	114, 120, 165
Cac8I	GCNNGC	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	77, 147
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	252, 339
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	3 cut(s)	76, 142, 204
EarI	CTCTTC	3 cut(s)	76, 142, 204
Eco24I	GRGCYC	2 cut(s)	37, 101
Eco88I	CYCGRG	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	37, 101
FaeI	CATG	1 cut(s)	97
FaiI	YATR	6 cut(s)	95, 321, 329, 362, 377, 398
FatI	CATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	5 cut(s)	9, 18, 21, 61, 325
FokI	GGATG	3 cut(s)	101, 107, 152
FriOI	GRGCYC	2 cut(s)	37, 101
Fsp4HI	GCNGC	5 cut(s)	9, 18, 21, 61, 325
FspBI	CTAG	2 cut(s)	170, 284
GluI	GCNGC	5 cut(s)	9, 18, 21, 61, 325
GsuI	CTGGAG	2 cut(s)	51, 85
HaeIII	GGCC	2 cut(s)	79, 149
HapII	CCGG	3 cut(s)	52, 75, 240
Hin1II	CATG	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	52, 75, 240
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	255, 414
Hpy188III	TCNNGA	4 cut(s)	30, 102, 176, 338
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	17, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 17
HpyF3I	CTNAG	2 cut(s)	252, 339
Hsp92II	CATG	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	4 cut(s)	32, 48, 104, 305
Lsp1109I	GCAGC	4 cut(s)	29, 32, 72, 336
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	170, 284
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	5 cut(s)	63, 129, 209, 212, 221
MhlI	GDGCHC	2 cut(s)	37, 101
MluCI	AATT	1 cut(s)	214
MnlI	CCTC	6 cut(s)	56, 59, 79, 90, 138, 192
MseI	TTAA	1 cut(s)	228
MspI	CCGG	3 cut(s)	52, 75, 240
MspR9I	CCNGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	14, 17
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	414
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	34, 100
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	10, 19, 22, 62, 326
PspN4I	GGNNCC	2 cut(s)	34, 100
PspPI	GGNCC	2 cut(s)	77, 147
PstI	CTGCAG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	5 cut(s)	9, 18, 21, 61, 325
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	2 cut(s)	77, 147
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	37, 101
SetI	ASST	7 cut(s)	45, 65, 175, 282, 289, 310, 403
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	2 cut(s)	170, 284
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	1 cut(s)	214
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	4 cut(s)	17, 20, 60, 324
TspDTI	ATGAA	1 cut(s)	82
XapI	RAATTY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XspI	CTAG	2 cut(s)	170, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.