Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019347

Physical Location & Seq

Genomic Coordinates Forward (+)

54633858 .. 54634448

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGATGAATTGTCGGACATCTAGGGTTACCATCCCCCACGACCTTAATATGGTTAGTGAAATAAATAGTGATGCATTGTTCATCTTGTTGATTGACCAATCCTCTAATGCTTATATACTGGAAAGAGAGCTGGCTCGGTTTGCAGAGCGCTTTCCACGCATCATTGTGTTTATCAATCAAGTACATGGACAGCCTGCTAACACTACGGGGCTCTTCTTGATGGAGATGAAGATGAAGTTTCCTAACATGCCGATGCTGGCTCTTGTTAATGCTAGTCCAGAAGGAGTGAAGATGTTACTTTCACTCGAGGGACTTGATGTAAAGTGGTTAGGAATCAGAACGGACGATTTTGCCAAATATAAAATACCTACCAATGTCGACACGCCACTGACTGAAGTTGACATCAAGTTGGCGAGACATCTCTTGGAGGAAGAACGTGTCCAAAAGAATCCGGTATTGCGTGATGACCTGAATCACATGGTAGCCACGGAGAGTACGGTAGAATCTGATGCTGTGCTAGCTTTGGGGGCACCCTTCTTGTATCAGGTTTATTTACCACTCAAACTCCAGTATATGGATTGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

196

Amino Acids

22.45

Weight (kDa)

5.4

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	46 - 190	3.8e-15	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363151
rosa_laevigata	RLG00000027588
rosa_multiflora	Rmu_sc0002925.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293410
rosa_rugosa	Rorug01G0305100.1
rosa_samantha	Rh1AG313800 Rh1BG277300 Rh1DG308000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	186, 499
AfeI	AGCGCT	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	52, 577
AflIII	ACRYGT	1 cut(s)	439
AluBI	AGCT	2 cut(s)	133, 524
AluI	AGCT	2 cut(s)	133, 524
Alw26I	GTCTC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	308
Aor51HI	AGCGCT	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	153
AsuNHI	GCTAGC	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	535
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	216
BccI	CCATC	2 cut(s)	41, 217
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	3 cut(s)	24, 276, 521
BfoI	RGCGCY	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	534
BmsI	GCATC	4 cut(s)	64, 171, 246, 502
BmtI	GCTAGC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 577
Bse1I	ACTGG	2 cut(s)	126, 571
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	52, 577
BseNI	ACTGG	2 cut(s)	126, 571
BseSI	GKGCMC	1 cut(s)	535
BshNI	GGYRCC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	52, 577
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	216, 535
BspLI	GGNNCC	1 cut(s)	534
BspOI	GCTAGC	1 cut(s)	524
BspQI	GCTCTTC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	532
BsrI	ACTGG	2 cut(s)	126, 571
BssECI	CCNNGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	4 cut(s)	135, 198, 261, 522
BstDSI	CCRYGG	1 cut(s)	489
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 159, 521, 530
BstNSI	RCATGY	1 cut(s)	253
BstPI	GGTNACC	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	4 cut(s)	135, 198, 261, 522
CfoI	GCGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	185, 498
CviAII	CATG	3 cut(s)	188, 250, 481
CviJI	RGCY	7 cut(s)	133, 137, 196, 214, 263, 488, 524
CviKI_1	RGCY	7 cut(s)	133, 137, 196, 214, 263, 488, 524
CviQI	GTAC	2 cut(s)	185, 498
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	216
Eco47III	AGCGCT	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	3 cut(s)	191, 253, 484
FaiI	YATR	9 cut(s)	53, 117, 119, 189, 251, 363, 482, 576, 578
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	3 cut(s)	187, 249, 480
FblI	GTMKAC	1 cut(s)	381
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	216
FspBI	CTAG	3 cut(s)	24, 276, 521
GlaI	GCGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	154
HapII	CCGG	1 cut(s)	455
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	191, 253, 484
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	2 cut(s)	382, 403
HindII	GTYRAC	2 cut(s)	382, 403
HinfI	GANTC	4 cut(s)	336, 451, 475, 506
HpaII	CCGG	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	382, 403
Hpy188I	TCNGA	3 cut(s)	18, 341, 511
Hpy188III	TCNNGA	2 cut(s)	220, 281
Hpy8I	GTNNAC	2 cut(s)	382, 403
HpyAV	CCTTC	2 cut(s)	278, 547
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	2 cut(s)	77, 146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 159, 521, 530
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	191, 253, 484
HspAI	GCGC	1 cut(s)	151
LguI	GCTCTTC	1 cut(s)	221
LpnPI	CCDG	9 cut(s)	107, 119, 210, 245, 294, 468, 485, 533, 584
LweI	GCATC	4 cut(s)	64, 171, 246, 502
MaeI	CTAG	3 cut(s)	24, 276, 521
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	28, 297
MboII	GAAGA	5 cut(s)	16, 208, 244, 304, 446
MhlI	GDGCHC	2 cut(s)	216, 535
MluCI	AATT	1 cut(s)	10
MnlI	CCTC	3 cut(s)	115, 304, 424
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	2 cut(s)	48, 270
MslI	CAYNNNNRTG	2 cut(s)	167, 254
MspI	CCGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	4 cut(s)	143, 159, 521, 530
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	3 cut(s)	191, 253, 484
NlaIV	GGNNCC	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	308
PciSI	GCTCTTC	1 cut(s)	221
PfeI	GAWTC	4 cut(s)	336, 451, 475, 506
PflMI	CCANNNNNTGG	1 cut(s)	577
PspEI	GGTNACC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	534
PspXI	VCTCGAGB	1 cut(s)	308
RsaI	GTAC	2 cut(s)	186, 499
RsaNI	GTAC	2 cut(s)	185, 498
RseI	CAYNNNNRTG	2 cut(s)	167, 254
SalI	GTCGAC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	48, 270
SduI	GDGCHC	2 cut(s)	216, 535
SetI	ASST	7 cut(s)	48, 135, 373, 442, 474, 526, 552
SfaNI	GCATC	4 cut(s)	64, 171, 246, 502
Sfr274I	CTCGAG	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	167, 254
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	10
SspMI	CTAG	3 cut(s)	24, 276, 521
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	309, 381
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	4 cut(s)	336, 451, 475, 506
Tru1I	TTAA	2 cut(s)	48, 270
Tru9I	TTAA	2 cut(s)	48, 270
TscAI	CASTG	1 cut(s)	396
TspDTI	ATGAA	5 cut(s)	17, 23, 73, 245, 251
TspGWI	ACGGA	2 cut(s)	359, 506
TspRI	CASTG	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	577
XceI	RCATGY	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	3 cut(s)	24, 276, 521
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.