Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019347

Physical Location & Seq

Genomic Coordinates Forward (+)

54633858 .. 54634448

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGATGAATTGTCGGACATCTAGGGTTACCATCCCCCACGACCTTAATATGGTTAGTGAAATAAATAGTGATGCATTGTTCATCTTGTTGATTGACCAATCCTCTAATGCTTATATACTGGAAAGAGAGCTGGCTCGGTTTGCAGAGCGCTTTCCACGCATCATTGTGTTTATCAATCAAGTACATGGACAGCCTGCTAACACTACGGGGCTCTTCTTGATGGAGATGAAGATGAAGTTTCCTAACATGCCGATGCTGGCTCTTGTTAATGCTAGTCCAGAAGGAGTGAAGATGTTACTTTCACTCGAGGGACTTGATGTAAAGTGGTTAGGAATCAGAACGGACGATTTTGCCAAATATAAAATACCTACCAATGTCGACACGCCACTGACTGAAGTTGACATCAAGTTGGCGAGACATCTCTTGGAGGAAGAACGTGTCCAAAAGAATCCGGTATTGCGTGATGACCTGAATCACATGGTAGCCACGGAGAGTACGGTAGAATCTGATGCTGTGCTAGCTTTGGGGGCACCCTTCTTGTATCAGGTTTATTTACCACTCAAACTCCAGTATATGGATTGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

196

Amino Acids

22.45

Weight (kDa)

5.4

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	46 - 190	3.8e-15	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363151
rosa_laevigata	RLG00000027588
rosa_multiflora	Rmu_sc0002925.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293410
rosa_rugosa	Rorug01G0305100.1
rosa_samantha	Rh1AG313800 Rh1BG277300 Rh1DG308000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	186, 499
AfeI	AGCGCT	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	52, 577
AflIII	ACRYGT	1 cut(s)	439
AluBI	AGCT	2 cut(s)	133, 524
AluI	AGCT	2 cut(s)	133, 524
Alw26I	GTCTC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	308
Aor51HI	AGCGCT	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	153
AsuNHI	GCTAGC	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	535
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	216
BccI	CCATC	2 cut(s)	41, 217
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	3 cut(s)	24, 276, 521
BfoI	RGCGCY	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	534
BmsI	GCATC	4 cut(s)	64, 171, 246, 502
BmtI	GCTAGC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 577
Bse1I	ACTGG	2 cut(s)	126, 571
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	52, 577
BseNI	ACTGG	2 cut(s)	126, 571
BseSI	GKGCMC	1 cut(s)	535
BshNI	GGYRCC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	52, 577
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	216, 535
BspLI	GGNNCC	1 cut(s)	534
BspOI	GCTAGC	1 cut(s)	524
BspQI	GCTCTTC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	532
BsrI	ACTGG	2 cut(s)	126, 571
BssECI	CCNNGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	4 cut(s)	135, 198, 261, 522
BstDSI	CCRYGG	1 cut(s)	489
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 159, 521, 530
BstNSI	RCATGY	1 cut(s)	253
BstPI	GGTNACC	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	4 cut(s)	135, 198, 261, 522
CfoI	GCGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	185, 498
CviAII	CATG	3 cut(s)	188, 250, 481
CviJI	RGCY	7 cut(s)	133, 137, 196, 214, 263, 488, 524
CviKI_1	RGCY	7 cut(s)	133, 137, 196, 214, 263, 488, 524
CviQI	GTAC	2 cut(s)	185, 498
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	216
Eco47III	AGCGCT	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	3 cut(s)	191, 253, 484
FaiI	YATR	9 cut(s)	53, 117, 119, 189, 251, 363, 482, 576, 578
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	3 cut(s)	187, 249, 480
FblI	GTMKAC	1 cut(s)	381
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	216
FspBI	CTAG	3 cut(s)	24, 276, 521
GlaI	GCGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	154
HapII	CCGG	1 cut(s)	455
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	191, 253, 484
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	2 cut(s)	382, 403
HindII	GTYRAC	2 cut(s)	382, 403
HinfI	GANTC	4 cut(s)	336, 451, 475, 506
HpaII	CCGG	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	382, 403
Hpy188I	TCNGA	3 cut(s)	18, 341, 511
Hpy188III	TCNNGA	2 cut(s)	220, 281
Hpy8I	GTNNAC	2 cut(s)	382, 403
HpyAV	CCTTC	2 cut(s)	278, 547
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	2 cut(s)	77, 146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 159, 521, 530
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	191, 253, 484
HspAI	GCGC	1 cut(s)	151
LguI	GCTCTTC	1 cut(s)	221
LpnPI	CCDG	9 cut(s)	107, 119, 210, 245, 294, 468, 485, 533, 584
LweI	GCATC	4 cut(s)	64, 171, 246, 502
MaeI	CTAG	3 cut(s)	24, 276, 521
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	28, 297
MboII	GAAGA	5 cut(s)	16, 208, 244, 304, 446
MhlI	GDGCHC	2 cut(s)	216, 535
MluCI	AATT	1 cut(s)	10
MnlI	CCTC	3 cut(s)	115, 304, 424
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	2 cut(s)	48, 270
MslI	CAYNNNNRTG	2 cut(s)	167, 254
MspI	CCGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	4 cut(s)	143, 159, 521, 530
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	3 cut(s)	191, 253, 484
NlaIV	GGNNCC	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	308
PciSI	GCTCTTC	1 cut(s)	221
PfeI	GAWTC	4 cut(s)	336, 451, 475, 506
PflMI	CCANNNNNTGG	1 cut(s)	577
PspEI	GGTNACC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	534
PspXI	VCTCGAGB	1 cut(s)	308
RsaI	GTAC	2 cut(s)	186, 499
RsaNI	GTAC	2 cut(s)	185, 498
RseI	CAYNNNNRTG	2 cut(s)	167, 254
SalI	GTCGAC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	48, 270
SduI	GDGCHC	2 cut(s)	216, 535
SetI	ASST	7 cut(s)	48, 135, 373, 442, 474, 526, 552
SfaNI	GCATC	4 cut(s)	64, 171, 246, 502
Sfr274I	CTCGAG	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	167, 254
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	10
SspMI	CTAG	3 cut(s)	24, 276, 521
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	309, 381
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	4 cut(s)	336, 451, 475, 506
Tru1I	TTAA	2 cut(s)	48, 270
Tru9I	TTAA	2 cut(s)	48, 270
TscAI	CASTG	1 cut(s)	396
TspDTI	ATGAA	5 cut(s)	17, 23, 73, 245, 251
TspGWI	ACGGA	2 cut(s)	359, 506
TspRI	CASTG	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	577
XceI	RCATGY	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	3 cut(s)	24, 276, 521
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.