Rroxscaffold_4G00293410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019347
Physical Location & Seq
Reverse (-)
13707427 .. 13707768
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293410.1

Sequence Viewer

Length: 342 bp
ATGTTGGCCGGAGACATGGAGAGGTTGTACCTATCTGGCGGCGAATCGTACGAAGGGGTCGAAGAAGATGAAGATTGCATGCAGACTGACACTGAATCTTTCGACGAAGTCGAAGACAGTCATGGAGGCGCGCGTGCACACAGTAGTCTGGAGGCTACCATTCAGAAAATTAAAAACGACAGAGAACAAGCCTATGCTCTTAAGGAGAGTCTTGATTCCGATGAGGCCATTATTGGAAGGCTCAACAAGTTTGCTGCTTCTCCCTCCCAACTACCAAGCCAGATCTCGTGTGATGGCACCTCCTTTGGTACTGTATATGGGAGGCTTAATTTCCGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.43

Weight (kDa)

4.32

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019347)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0363151
rosa_laevigata RLG00000027588
rosa_multiflora Rmu_sc0002925.1_g000001
rosa_roxburghii Rroxscaffold_4G00293410
rosa_rugosa Rorug01G0305100.1
rosa_samantha Rh1AG313800 Rh1BG277300 Rh1DG308000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AccII CGCG 2 cut(s) 131, 133
AciI CCGC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 6
AfaI GTAC 3 cut(s) 29, 50, 310
AflII CTTAAG 1 cut(s) 200
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 6
Alw44I GTGCAC 1 cut(s) 135
AoxI GGCC 2 cut(s) 6, 225
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 2 cut(s) 131, 133
BaeGI GKGCMC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 296
BauI CACGAG 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 200
BglII AGATCT 1 cut(s) 282
BisI GCNGC 2 cut(s) 40, 255
BlsI GCNGC 2 cut(s) 41, 256
BmiI GGNNCC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
BsePI GCGCGC 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 2 cut(s) 131, 133
BshFI GGCC 2 cut(s) 8, 227
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 9
BsiWI CGTACG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 6
BsnI GGCC 2 cut(s) 8, 227
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 1 cut(s) 39
BspANI GGCC 2 cut(s) 8, 227
BspFNI CGCG 2 cut(s) 131, 133
BspLI GGNNCC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 296
BspTI CTTAAG 1 cut(s) 200
BssHII GCGCGC 1 cut(s) 129
BssMI GATC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 119, 143, 313
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 3 cut(s) 80, 131, 135
BstFNI CGCG 2 cut(s) 131, 133
BstHHI GCGC 2 cut(s) 131, 133
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 82
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 2 cut(s) 131, 133
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 2 cut(s) 8, 227
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 3 cut(s) 80, 131, 135
CfoI GCGC 2 cut(s) 131, 133
Csp6I GTAC 3 cut(s) 28, 49, 309
CviAII CATG 3 cut(s) 16, 79, 122
CviJI RGCY 7 cut(s) 8, 155, 191, 227, 241, 279, 325
CviKI_1 RGCY 7 cut(s) 8, 155, 191, 227, 241, 279, 325
CviQI GTAC 3 cut(s) 28, 49, 309
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 6
FaeI CATG 3 cut(s) 19, 82, 125
FaiI YATR 8 cut(s) 17, 80, 123, 195, 316, 318, 338, 340
FatI CATG 3 cut(s) 15, 78, 121
Fnu4HI GCNGC 2 cut(s) 40, 255
Fsp4HI GCNGC 2 cut(s) 40, 255
GlaI GCGC 2 cut(s) 130, 132
GluI GCNGC 2 cut(s) 40, 255
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 2 cut(s) 8, 227
HapII CCGG 1 cut(s) 9
HhaI GCGC 2 cut(s) 131, 133
Hin1II CATG 3 cut(s) 19, 82, 125
Hin6I GCGC 2 cut(s) 129, 131
HinP1I GCGC 2 cut(s) 129, 131
HinfI GANTC 4 cut(s) 44, 95, 208, 215
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 165, 220
Hpy188III TCNNGA 2 cut(s) 149, 212
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 47, 231
HpyCH4III ACNGT 3 cut(s) 119, 143, 313
HpyCH4V TGCA 3 cut(s) 78, 82, 137
Hsp92II CATG 3 cut(s) 19, 82, 125
HspAI GCGC 2 cut(s) 129, 131
Kzo9I GATC 1 cut(s) 282
LpnPI CCDG 4 cut(s) 21, 22, 134, 293
Lsp1109I GCAGC 1 cut(s) 241
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 4 cut(s) 74, 77, 83, 125
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 2 cut(s) 168, 328
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 7 cut(s) 15, 119, 145, 217, 274, 310, 315
MseI TTAA 3 cut(s) 171, 201, 327
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 9
MvnI CGCG 2 cut(s) 131, 133
NdeII GATC 1 cut(s) 282
NlaIII CATG 3 cut(s) 19, 82, 125
NlaIV GGNNCC 1 cut(s) 298
NspI RCATGY 1 cut(s) 82
PaeI GCATGC 1 cut(s) 82
PauI GCGCGC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 108
PfeI GAWTC 3 cut(s) 44, 95, 215
Pfl23II CGTACG 1 cut(s) 48
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 41, 256
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PspLI CGTACG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 107
PteI GCGCGC 1 cut(s) 129
RsaI GTAC 3 cut(s) 29, 50, 310
RsaNI GTAC 3 cut(s) 28, 49, 309
SaqAI TTAA 3 cut(s) 171, 201, 327
SatI GCNGC 2 cut(s) 40, 255
Sau3AI GATC 1 cut(s) 282
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 139
SetI ASST 3 cut(s) 26, 33, 302
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SphI GCATGC 1 cut(s) 82
Sse9I AATT 2 cut(s) 168, 328
SsiI CCGC 1 cut(s) 39
TaaI ACNGT 3 cut(s) 119, 143, 313
TaqI TCGA 3 cut(s) 60, 102, 111
TasI AATT 2 cut(s) 168, 328
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 3 cut(s) 44, 95, 215
Tru1I TTAA 3 cut(s) 171, 201, 327
Tru9I TTAA 3 cut(s) 171, 201, 327
TscAI CASTG 1 cut(s) 97
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 200
VneI GTGCAC 1 cut(s) 135
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.