RchiOBHm_Chr1g0366341

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0022613
Physical Location & Seq
Reverse (-)
56933056 .. 56933607
552 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
ATGGGAGCTTACAAGTACGTCCCCGAACTAAGGCGGAAGAAGCAATCTGATGTGATGGGGTTCGTCCAGAGGGTTCGCTGCTGTCAGCATCCTTCGATTGTCCGAGTCACAAGGACTCGCCCCTACAAGGCCAAGCAGGGATATGTTATCTACCGTGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCTGTTGCCAAGGGTATTGTGTATGAGAAGCGCACCAACCAGGGAGTTACACAACTAACGCAGCAAGAAGAGCGCGCTGGTCGTAAGTTGGGTGGCCTTAGGGTTCTCAATGAGGATTCAACCTACATGTACTCTGAGGTTATTCTTGTTCATGTTGCTCACACAGTATCAAGAAAGACCCAAGAATCAATTGGATCGTCGATCCTGTTCACAAGCACAGAGAGCTTCGTGGCCTCACTTCTGCTGGGAAGAAATACAGTGGACTGCGTGGATAGGGTCACATTTACCACAAGAATCGTCCTTCTCGCTGCAGGTCAACCTAGCTGGAAGAGAAACAACACCCTCTCCCATCGTCGCTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

183

Amino Acids

21.06

Weight (kDa)

10.95

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 2 - 121 3.7e-25 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022613)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0366341
rosa_laevigata RLG00000027351
rosa_roxburghii Rroxscaffold_4G00289980
rosa_samantha Rh1AG337300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 488
AccII CGCG 1 cut(s) 261
AciI CCGC 1 cut(s) 34
AclWI GGATC 2 cut(s) 382, 388
AfaI GTAC 2 cut(s) 17, 317
AfiI CCNNNNNNNGG 2 cut(s) 30, 127
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 306
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 3 cut(s) 8, 411, 510
AluI AGCT 3 cut(s) 8, 411, 510
AlwI GGATC 2 cut(s) 382, 388
AoxI GGCC 4 cut(s) 129, 185, 280, 417
ApeKI GCWGC 3 cut(s) 78, 247, 494
AspLEI GCGC 3 cut(s) 219, 261, 263
AxyI CCTNAGG 1 cut(s) 284
BbvI GCAGC 3 cut(s) 65, 259, 481
BccI CCATC 2 cut(s) 49, 543
BciT130I CCWGG 1 cut(s) 227
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 488
BisI GCNGC 3 cut(s) 79, 248, 495
BlsI GCNGC 3 cut(s) 80, 249, 496
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 195, 226
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 127
Bse21I CCTNAGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 195, 226
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 30, 127
BseMII CTCAG 1 cut(s) 312
BsePI GCGCGC 1 cut(s) 259
BseXI GCAGC 3 cut(s) 65, 259, 481
BseYI CCCAGC 1 cut(s) 430
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 4 cut(s) 131, 187, 282, 419
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 30, 127
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 4 cut(s) 131, 187, 282, 419
Bsp143I GATC 2 cut(s) 380, 387
BspACI CCGC 1 cut(s) 34
BspANI GGCC 4 cut(s) 131, 187, 282, 419
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 488
BspPI GGATC 2 cut(s) 382, 388
BspQI GCTCTTC 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 195, 226
BssHII GCGCGC 1 cut(s) 259
BssMI GATC 2 cut(s) 380, 387
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 4 cut(s) 155, 352, 445, 548
Bst6I CTCTTC 2 cut(s) 249, 509
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 29, 284, 321
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 3 cut(s) 219, 261, 263
BstKTI GATC 2 cut(s) 383, 390
BstMBI GATC 2 cut(s) 380, 387
BstMWI GCNNNNNNNGC 3 cut(s) 40, 256, 408
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 65, 259, 481
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 4 cut(s) 131, 187, 282, 419
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 488
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 3 cut(s) 219, 261, 263
Csp6I GTAC 2 cut(s) 16, 316
CviAII CATG 2 cut(s) 313, 338
CviJI RGCY 7 cut(s) 8, 131, 187, 282, 411, 419, 510
CviKI_1 RGCY 7 cut(s) 8, 131, 187, 282, 411, 419, 510
CviQI GTAC 2 cut(s) 16, 316
DdeI CTNAG 3 cut(s) 29, 284, 321
DpnI GATC 2 cut(s) 382, 389
DpnII GATC 2 cut(s) 380, 387
Eam1104I CTCTTC 2 cut(s) 249, 509
EarI CTCTTC 2 cut(s) 249, 509
EciI GGCGGA 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 316, 341
FaiI YATR 4 cut(s) 144, 210, 314, 339
FaqI GGGAC 1 cut(s) 5
FatI CATG 2 cut(s) 312, 337
Fnu4HI GCNGC 3 cut(s) 79, 248, 495
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 3 cut(s) 79, 248, 495
FspBI CTAG 1 cut(s) 507
GlaI GCGC 3 cut(s) 218, 260, 262
GluI GCNGC 3 cut(s) 79, 248, 495
GsaI CCCAGC 1 cut(s) 434
HaeIII GGCC 4 cut(s) 131, 187, 282, 419
HhaI GCGC 3 cut(s) 219, 261, 263
Hin1II CATG 2 cut(s) 316, 341
Hin6I GCGC 3 cut(s) 217, 259, 261
HinP1I GCGC 3 cut(s) 217, 259, 261
HincII GTYRAC 1 cut(s) 503
HindII GTYRAC 1 cut(s) 503
HinfI GANTC 5 cut(s) 105, 115, 302, 371, 480
Hpy166II GTNNAC 3 cut(s) 396, 448, 503
Hpy188I TCNGA 3 cut(s) 49, 104, 322
Hpy188III TCNNGA 2 cut(s) 67, 357
Hpy8I GTNNAC 3 cut(s) 396, 448, 503
Hpy99I CGWCG 2 cut(s) 388, 543
HpyAV CCTTC 2 cut(s) 102, 497
HpyCH4III ACNGT 4 cut(s) 155, 352, 445, 548
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 256, 408
HpyF3I CTNAG 3 cut(s) 29, 284, 321
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 316, 341
HspAI GCGC 3 cut(s) 217, 259, 261
Kzo9I GATC 2 cut(s) 380, 387
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 3 cut(s) 65, 259, 481
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 106, 232, 463
MalI GATC 2 cut(s) 382, 389
MboI GATC 2 cut(s) 380, 387
MboII GAAGA 4 cut(s) 49, 266, 447, 526
MfeI CAATTG 1 cut(s) 375
MluCI AATT 1 cut(s) 375
MlyI GAGTC 2 cut(s) 109, 114
MnlI CCTC 7 cut(s) 63, 159, 177, 292, 316, 430, 539
MspR9I CCNGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 40, 256, 408
NdeII GATC 2 cut(s) 380, 387
NlaIII CATG 2 cut(s) 316, 341
NmuCI GTSAC 2 cut(s) 106, 463
NspI RCATGY 1 cut(s) 316
PauI GCGCGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 187
PciI ACATGT 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PfeI GAWTC 3 cut(s) 302, 371, 480
PkrI GCNGC 3 cut(s) 80, 249, 496
PleI GAGTC 2 cut(s) 109, 113
PpsI GAGTC 2 cut(s) 109, 113
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 225
PstI CTGCAG 1 cut(s) 499
PteI GCGCGC 1 cut(s) 259
RsaI GTAC 2 cut(s) 17, 317
RsaNI GTAC 2 cut(s) 16, 316
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 3 cut(s) 79, 248, 495
Sau3AI GATC 2 cut(s) 380, 387
SchI GAGTC 2 cut(s) 109, 114
ScrFI CCNGG 1 cut(s) 227
SetI ASST 8 cut(s) 10, 21, 311, 327, 413, 502, 508, 512
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 495
Sse9I AATT 1 cut(s) 375
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 34
SspMI CTAG 1 cut(s) 507
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 4 cut(s) 155, 352, 445, 548
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 95, 386
TasI AATT 1 cut(s) 375
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 3 cut(s) 302, 371, 480
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 106, 463
TseI GCWGC 3 cut(s) 78, 247, 494
Tsp45I GTSAC 2 cut(s) 106, 463
TspDTI ATGAA 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 450
XceI RCATGY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.