Rroxscaffold_4G00289980

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0022613
Physical Location & Seq
Forward (+)
10564588 .. 10565136
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289980.1

Sequence Viewer

Length: 549 bp
ATGGGAGCTTACAAGTACGTCCCTGAGCAAAGGCTGAAGAAGCAATCTGATGTGATGGGGTTCGTCCAGAGGGTTCGCTGCTGTCAGCAACCTTGGATTGTCCGAGTCAAAAGGACTCGCCCCGACAAGGCCAAGCAGGGATATGTTATCTACCGTGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCTGTTGCCAAGGGTATTGTGCATGAGAAGCGCACCAACCAGGGAGTTACACAACTAACGCAGCAAGAAGAGCGCGCTGGTCGTAAGTTGGGTGGCCTTAGGGTTCTCAATGAGGATTCAACCTACAAGTACTCTGAGGTTATTCTTGTTCATGTTGCTCACACGGTATCAAGAAAGACCCAAGAATCAATTGGATCGTCGATCCTGTTCACAAGCACAGAGAGCTTCGTGGCCTCACTTCTGCTGGGAAGAAATACAGTGGACTGCGTGGATAGGGTCACATTTACCACAAGAATCGTCCTTCTCGCAGGTCAACCTAGCTGGAAGAGAAACAGCACCCTCTCCCTTAGTCGCTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

182

Amino Acids

20.88

Weight (kDa)

10.85

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 2 - 121 1.1e-24 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022613)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0366341
rosa_laevigata RLG00000027351
rosa_roxburghii Rroxscaffold_4G00289980
rosa_samantha Rh1AG337300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 485
AccII CGCG 1 cut(s) 261
AclWI GGATC 2 cut(s) 382, 388
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 17, 317
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 306
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 3 cut(s) 8, 411, 507
AluI AGCT 3 cut(s) 8, 411, 507
AlwI GGATC 2 cut(s) 382, 388
AoxI GGCC 4 cut(s) 129, 185, 280, 417
ApeKI GCWGC 2 cut(s) 78, 247
AspLEI GCGC 3 cut(s) 219, 261, 263
AxyI CCTNAGG 1 cut(s) 284
BbvI GCAGC 2 cut(s) 65, 259
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 227
BfaI CTAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 485
BisI GCNGC 2 cut(s) 79, 248
BlsI GCNGC 2 cut(s) 80, 249
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 92, 195, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 92, 195, 226
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 15, 312
BsePI GCGCGC 1 cut(s) 259
BseXI GCAGC 2 cut(s) 65, 259
BseYI CCCAGC 1 cut(s) 430
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 4 cut(s) 131, 187, 282, 419
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 4 cut(s) 131, 187, 282, 419
Bsp143I GATC 2 cut(s) 380, 387
BspANI GGCC 4 cut(s) 131, 187, 282, 419
BspCNI CTCAG 2 cut(s) 16, 313
BspFNI CGCG 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 382, 388
BspQI GCTCTTC 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 92, 195, 226
BssHII GCGCGC 1 cut(s) 259
BssMI GATC 2 cut(s) 380, 387
BssT1I CCWWGG 2 cut(s) 92, 195
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 4 cut(s) 155, 352, 445, 545
Bst6I CTCTTC 2 cut(s) 249, 506
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 24, 284, 321, 533
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 3 cut(s) 219, 261, 263
BstKTI GATC 2 cut(s) 383, 390
BstMBI GATC 2 cut(s) 380, 387
BstMWI GCNNNNNNNGC 4 cut(s) 40, 214, 256, 408
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 65, 259
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 4 cut(s) 131, 187, 282, 419
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 3 cut(s) 219, 261, 263
Csp6I GTAC 2 cut(s) 16, 316
CviAII CATG 2 cut(s) 209, 338
CviJI RGCY 8 cut(s) 8, 34, 131, 187, 282, 411, 419, 507
CviKI_1 RGCY 8 cut(s) 8, 34, 131, 187, 282, 411, 419, 507
CviQI GTAC 2 cut(s) 16, 316
DdeI CTNAG 4 cut(s) 24, 284, 321, 533
DpnI GATC 2 cut(s) 382, 389
DpnII GATC 2 cut(s) 380, 387
Eam1104I CTCTTC 2 cut(s) 249, 506
EarI CTCTTC 2 cut(s) 249, 506
Eco130I CCWWGG 2 cut(s) 92, 195
Eco147I AGGCCT 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 92, 195
ErhI CCWWGG 2 cut(s) 92, 195
FaeI CATG 2 cut(s) 212, 341
FaiI YATR 3 cut(s) 144, 210, 339
FaqI GGGAC 1 cut(s) 5
FatI CATG 2 cut(s) 208, 337
Fnu4HI GCNGC 2 cut(s) 79, 248
Fsp4HI GCNGC 2 cut(s) 79, 248
FspBI CTAG 1 cut(s) 504
GlaI GCGC 3 cut(s) 218, 260, 262
GluI GCNGC 2 cut(s) 79, 248
GsaI CCCAGC 1 cut(s) 434
HaeIII GGCC 4 cut(s) 131, 187, 282, 419
HhaI GCGC 3 cut(s) 219, 261, 263
Hin1II CATG 2 cut(s) 212, 341
Hin6I GCGC 3 cut(s) 217, 259, 261
HinP1I GCGC 3 cut(s) 217, 259, 261
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HinfI GANTC 5 cut(s) 105, 115, 302, 371, 480
Hpy166II GTNNAC 3 cut(s) 396, 448, 500
Hpy188I TCNGA 3 cut(s) 49, 104, 322
Hpy188III TCNNGA 2 cut(s) 67, 357
Hpy8I GTNNAC 3 cut(s) 396, 448, 500
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 4 cut(s) 155, 352, 445, 545
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 214, 256, 408
HpyF3I CTNAG 4 cut(s) 24, 284, 321, 533
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 212, 341
HspAI GCGC 3 cut(s) 217, 259, 261
Kzo9I GATC 2 cut(s) 380, 387
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 2 cut(s) 65, 259
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 232, 463
MalI GATC 2 cut(s) 382, 389
MboI GATC 2 cut(s) 380, 387
MboII GAAGA 4 cut(s) 49, 266, 447, 523
MfeI CAATTG 1 cut(s) 375
MluCI AATT 1 cut(s) 375
MlyI GAGTC 2 cut(s) 109, 114
MnlI CCTC 7 cut(s) 63, 159, 177, 292, 316, 430, 536
MspR9I CCNGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 4 cut(s) 40, 214, 256, 408
NdeII GATC 2 cut(s) 380, 387
NlaIII CATG 2 cut(s) 212, 341
NmuCI GTSAC 1 cut(s) 463
PauI GCGCGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 3 cut(s) 302, 371, 480
PkrI GCNGC 2 cut(s) 80, 249
PleI GAGTC 2 cut(s) 109, 113
PpsI GAGTC 2 cut(s) 109, 113
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 225
PteI GCGCGC 1 cut(s) 259
RsaI GTAC 2 cut(s) 17, 317
RsaNI GTAC 2 cut(s) 16, 316
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 2 cut(s) 79, 248
Sau3AI GATC 2 cut(s) 380, 387
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 2 cut(s) 109, 114
ScrFI CCNGG 1 cut(s) 227
SetI ASST 9 cut(s) 10, 21, 94, 311, 327, 413, 499, 505, 509
Sse9I AATT 1 cut(s) 375
SseBI AGGCCT 1 cut(s) 187
SspMI CTAG 1 cut(s) 504
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 2 cut(s) 92, 195
TaaI ACNGT 4 cut(s) 155, 352, 445, 545
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 386
TasI AATT 1 cut(s) 375
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 3 cut(s) 302, 371, 480
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 78, 247
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XspI CTAG 1 cut(s) 504
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.