RLG00000027351

Belongs to the eukaryotic ribosomal protein eL15 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0022613
Physical Location & Seq
Forward (+)
10844482 .. 10845254
773 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027351

Sequence Viewer

Length: 552 bp
ATGGGAGCTTACAAGTACGTCCCTGAGCTAAGGCGGAAGAAGCAATCTGATGTGATGGGGTTCGTCCAGAGGGTTCGCTGCTGTCAGCATCCTTGGATTGTCCGAGTCACAAGGACTCGCCTCGACAAGGCCAAGCAGGGATATGTTATCTACCGTGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCTGTTGCCAAGGGTATTGTGTATGAGAAGTGCACCAACCAGGGAGTTACACAACTAACGCAGCAAGAAGAGCGTGCTGGTCGTAAGTTGGGTGGCCTTAGGGTTCTCAATGAGGATTCAACCTACAAGTACTCTGAGGTTATTCTTGTTCATGTTGCTCACACGGTATCAAGAAAGACCCAAGAATCAATTGGATCGTCGATCCTGTTCACAAGCACAGAGAGCTTCGTGGCCTCACTTCTGCTGGGAAGAAATACAGTGGACTGCGTGGATAGGGTCACATTTACCACAAGAATCGTCCTTCTCGCAGGTCAACCTAGCTGGAAGAGAAACAACAGTACTCTCTCCCTTCGTCGCTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L15e

Protein Analysis

184

Amino Acids

21.06

Weight (kDa)

10.73

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L15e PF00827 2 - 121 8.7e-27 Ribosomal L15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022613)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0366341
rosa_laevigata RLG00000027351
rosa_roxburghii Rroxscaffold_4G00289980
rosa_samantha Rh1AG337300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 485
AciI CCGC 1 cut(s) 34
AclWI GGATC 2 cut(s) 382, 388
AfaI GTAC 3 cut(s) 17, 317, 526
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 306
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 4 cut(s) 8, 28, 411, 507
AluI AGCT 4 cut(s) 8, 28, 411, 507
Alw21I GWGCWC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 217
AlwI GGATC 2 cut(s) 382, 388
AoxI GGCC 4 cut(s) 129, 185, 280, 417
ApaLI GTGCAC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 78, 247
AxyI CCTNAGG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 65, 259
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 227
BfaI CTAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 485
BisI GCNGC 2 cut(s) 79, 248
BlsI GCNGC 2 cut(s) 80, 249
BmcAI AGTACT 2 cut(s) 317, 526
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 97
Bpu10I CCTNAGC 2 cut(s) 24, 29
BsaJI CCNNGG 3 cut(s) 92, 195, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 92, 195, 226
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 15, 312
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 65, 259
BseYI CCCAGC 1 cut(s) 430
BshFI GGCC 4 cut(s) 131, 187, 282, 419
BsiHKAI GWGCWC 1 cut(s) 221
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 4 cut(s) 131, 187, 282, 419
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 2 cut(s) 380, 387
BspACI CCGC 1 cut(s) 34
BspANI GGCC 4 cut(s) 131, 187, 282, 419
BspCNI CTCAG 2 cut(s) 16, 313
BspMI ACCTGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 382, 388
BspQI GCTCTTC 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 92, 195, 226
BssMI GATC 2 cut(s) 380, 387
BssT1I CCWWGG 2 cut(s) 92, 195
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 5 cut(s) 155, 352, 445, 524, 548
Bst6I CTCTTC 2 cut(s) 249, 506
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 24, 29, 284, 321
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 383, 390
BstMBI GATC 2 cut(s) 380, 387
BstMWI GCNNNNNNNGC 3 cut(s) 40, 256, 408
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 65, 259
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 4 cut(s) 131, 187, 282, 419
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 1 cut(s) 261
Csp6I GTAC 3 cut(s) 16, 316, 525
CviAII CATG 1 cut(s) 338
CviJI RGCY 8 cut(s) 8, 28, 131, 187, 282, 411, 419, 507
CviKI_1 RGCY 8 cut(s) 8, 28, 131, 187, 282, 411, 419, 507
CviQI GTAC 3 cut(s) 16, 316, 525
DdeI CTNAG 4 cut(s) 24, 29, 284, 321
DpnI GATC 2 cut(s) 382, 389
DpnII GATC 2 cut(s) 380, 387
Eam1104I CTCTTC 2 cut(s) 249, 506
EarI CTCTTC 2 cut(s) 249, 506
EciI GGCGGA 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 92, 195
Eco147I AGGCCT 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 92, 195
ErhI CCWWGG 2 cut(s) 92, 195
FaeI CATG 1 cut(s) 341
FaiI YATR 3 cut(s) 144, 210, 339
FaqI GGGAC 1 cut(s) 5
FatI CATG 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 79, 248
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 79, 248
FspBI CTAG 1 cut(s) 504
GluI GCNGC 2 cut(s) 79, 248
GsaI CCCAGC 1 cut(s) 434
HaeIII GGCC 4 cut(s) 131, 187, 282, 419
Hin1II CATG 1 cut(s) 341
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HinfI GANTC 5 cut(s) 105, 115, 302, 371, 480
Hpy166II GTNNAC 4 cut(s) 219, 396, 448, 500
Hpy188I TCNGA 3 cut(s) 49, 104, 322
Hpy188III TCNNGA 2 cut(s) 67, 357
Hpy8I GTNNAC 4 cut(s) 219, 396, 448, 500
Hpy99I CGWCG 2 cut(s) 388, 543
HpyAV CCTTC 2 cut(s) 497, 545
HpyCH4III ACNGT 5 cut(s) 155, 352, 445, 524, 548
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 256, 408
HpyF3I CTNAG 4 cut(s) 24, 29, 284, 321
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 341
Kzo9I GATC 2 cut(s) 380, 387
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 2 cut(s) 65, 259
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 106, 232, 463
MalI GATC 2 cut(s) 382, 389
MboI GATC 2 cut(s) 380, 387
MboII GAAGA 4 cut(s) 49, 266, 447, 523
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 1 cut(s) 375
MlyI GAGTC 2 cut(s) 109, 114
MnlI CCTC 7 cut(s) 63, 131, 159, 177, 292, 316, 430
MspR9I CCNGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 40, 256, 408
NdeII GATC 2 cut(s) 380, 387
NlaIII CATG 1 cut(s) 341
NmuCI GTSAC 2 cut(s) 106, 463
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PfeI GAWTC 3 cut(s) 302, 371, 480
PkrI GCNGC 2 cut(s) 80, 249
PleI GAGTC 2 cut(s) 109, 113
PpsI GAGTC 2 cut(s) 109, 113
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 225
RsaI GTAC 3 cut(s) 17, 317, 526
RsaNI GTAC 3 cut(s) 16, 316, 525
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 2 cut(s) 79, 248
Sau3AI GATC 2 cut(s) 380, 387
ScaI AGTACT 2 cut(s) 317, 526
SchI GAGTC 2 cut(s) 109, 114
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 221
SetI ASST 9 cut(s) 10, 21, 30, 311, 327, 413, 499, 505, 509
SfaNI GCATC 1 cut(s) 97
Sse9I AATT 1 cut(s) 375
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 34
SspMI CTAG 1 cut(s) 504
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 2 cut(s) 92, 195
TaaI ACNGT 5 cut(s) 155, 352, 445, 524, 548
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 123, 386
TasI AATT 1 cut(s) 375
TatI WGTACW 2 cut(s) 315, 524
TfiI GAWTC 3 cut(s) 302, 371, 480
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 106, 463
TseI GCWGC 2 cut(s) 78, 247
Tsp45I GTSAC 2 cut(s) 106, 463
TspDTI ATGAA 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 450
VneI GTGCAC 1 cut(s) 217
XagI CCTNNNNNAGG 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XspI CTAG 1 cut(s) 504
ZrmI AGTACT 2 cut(s) 317, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.