Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021313

Physical Location & Seq

Genomic Coordinates Reverse (-)

58694592 .. 58695835

Gene Structure 1244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTAAAGAAGAATACAGAATGCACTGCATCTGCTTCGGAATGGGTTGGAGGAATGTTCCCTGGCATACTGGATGATGTAATCAGACGTCTCACAGAGGTCCAATCAGAAAGGCCGGGGAAGCAGGTCCATCTCTCGCAGTCTGAGATCCAGCAGCCTTGTGTAGCTTCCAAAGACATCTTCCTTCAACAGCCCAATTTGCTGGAGCTTAAAGGCCCTGTCAGTATTTGTGGCAACATCAATGGGCAATACTCTGACCTGTTGAGGCTCTTTGAACATGGTGGTTTTCCTCCTAGTGCAAATTATCTATTCCTAGGTGGTTATGTGGATTATGGGAAGCAAAGTATAGAAACAATGTGCCTCTTGCTTGCTTATAAAATCAAACATCCGGAGAACTTCTTTCTCCTTAGAGGGAATCATGAATGCGCTTCTATCAACCTAAAACATGGATTTTATGATGAATGCAAGCGGAGATTCAATGTGAGAATATGGAAATGCTTCAATGACGACTCTTTTAACTGTCTTCCTGCGGGAGCTCTTGTAGATGACAGAATATTATGTGTGCATGGTGGTCTTCCGCCCGATTTGGAGAACTTGGATCAGATCAGAAACTTGCCTCGTCCTAGTAATGTCCCTGATACCGGCTTGCTTTGTGATTTGCTCTGGTCAAGTCCTTGTAGTGATGTTAAGGGATGGGGAACGAACAAACAGTCAGAACACATTGAACTCCCATTCTCTTACTTAACCTTTGGGTCTGATAAGGTGACAGAATTCTTAATGGAGCATGATTTGGACCTTCTTTGTTGTGCACAACAGGTTGTGGAGTGTGATCGCGGTTATGAATTCTTCGCCAACAGCCAACTTGGTACAATTTCATCAGCCCCCAACTTCCGCAGTGAACATAACAATGCTGGAGCTATGATGCATGTAGATGAGACCTTAATGTGCTCCTTCCAGATTCTCAAGGCAAAAGTCAAGAGATCTGTGTTCAATTTTTCACCAGTAACAAGAGCATTTCAGAGAAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

343

Amino Acids

38.65

Weight (kDa)

5.82

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	24 - 71	2.2e-16	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	76 - 270	5.5e-32	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021313)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368681
rosa_roxburghii	Rroxscaffold_4G00288360
rosa_samantha	Rh1BG314700 Rh1CG329500 Rh1DG346300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AatII	GACGTC	1 cut(s)	91
Acc36I	ACCTGC	1 cut(s)	115
AccII	CGCG	1 cut(s)	834
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	5 cut(s)	469, 530, 578, 834, 892
AclWI	GGATC	2 cut(s)	142, 606
AcsI	RAATTY	2 cut(s)	770, 842
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	868
AfiI	CCNNNNNNNGG	1 cut(s)	641
AgsI	TTSAA	6 cut(s)	188, 275, 478, 502, 725, 991
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	4 cut(s)	167, 208, 536, 917
AluI	AGCT	4 cut(s)	167, 208, 536, 917
Alw21I	GWGCWC	3 cut(s)	538, 811, 950
Alw26I	GTCTC	2 cut(s)	95, 929
Alw44I	GTGCAC	1 cut(s)	807
AlwI	GGATC	2 cut(s)	142, 606
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	2 cut(s)	113, 214
ApaLI	GTGCAC	1 cut(s)	807
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	2 cut(s)	770, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
Asp700I	GAANNNNTTC	1 cut(s)	497
AspA2I	CCTAGG	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	4 cut(s)	100, 127, 215, 793
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	775, 990
AvaII	GGWCC	3 cut(s)	100, 127, 793
AvrII	CCTAGG	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	538
BbsI	GAAGAC	2 cut(s)	515, 566
Bbv12I	GWGCWC	3 cut(s)	538, 811, 950
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	138, 687
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	95, 929
BfaI	CTAG	3 cut(s)	294, 314, 624
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	980
BisI	GCNGC	1 cut(s)	155
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	63, 117
Bme18I	GGWCC	3 cut(s)	100, 127, 793
BmgT120I	GGNCC	4 cut(s)	100, 127, 215, 793
BmrFI	CCNGG	2 cut(s)	63, 117
BmsI	GCATC	2 cut(s)	38, 912
BpiI	GAAGAC	2 cut(s)	515, 566
BpmI	CTGGAG	2 cut(s)	224, 933
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	929
BsaJI	CCNNGG	3 cut(s)	61, 116, 313
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	75, 1001
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	61, 116, 313
BseGI	GGATG	3 cut(s)	79, 385, 698
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	75, 1001
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	834
BshFI	GGCC	2 cut(s)	115, 216
BsiHKAI	GWGCWC	3 cut(s)	538, 811, 950
BsiSI	CCGG	3 cut(s)	116, 389, 642
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	2 cut(s)	95, 929
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	3 cut(s)	26, 428, 467
BsnI	GGCC	2 cut(s)	115, 216
Bso31I	GGTCTC	1 cut(s)	929
Bsp1286I	GDGCHC	3 cut(s)	538, 811, 950
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	5 cut(s)	147, 598, 603, 829, 980
BspACI	CCGC	5 cut(s)	469, 530, 578, 834, 892
BspANI	GGCC	2 cut(s)	115, 216
BspCNI	CTCAG	1 cut(s)	136
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	834
BspHI	TCATGA	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	142, 606
BspTNI	GGTCTC	1 cut(s)	929
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	75, 1001
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	3 cut(s)	61, 116, 313
BssMI	GATC	5 cut(s)	147, 598, 603, 829, 980
BssNI	GRCGYC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	521, 711
BstACI	GRCGYC	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	369, 467, 647
BstDEI	CTNAG	2 cut(s)	144, 407
BstF5I	GGATG	3 cut(s)	79, 385, 698
BstFNI	CGCG	1 cut(s)	834
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	5 cut(s)	150, 601, 606, 832, 983
BstMAI	GTCTC	2 cut(s)	95, 929
BstMBI	GATC	5 cut(s)	147, 598, 603, 829, 980
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 199
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	2 cut(s)	61, 115
BstSLI	GKGCMC	1 cut(s)	811
BstUI	CGCG	1 cut(s)	834
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	2 cut(s)	515, 566
BstX2I	RGATCY	2 cut(s)	147, 980
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	2 cut(s)	147, 980
BsuRI	GGCC	2 cut(s)	115, 216
BtsCI	GGATG	3 cut(s)	79, 385, 698
BtsI	GCAGTG	2 cut(s)	24, 901
BtsIMutI	CAGTG	2 cut(s)	24, 901
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	369, 467, 647
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	4 cut(s)	100, 127, 215, 793
Csp6I	GTAC	1 cut(s)	867
CviAII	CATG	6 cut(s)	278, 419, 446, 566, 785, 926
CviQI	GTAC	1 cut(s)	867
DdeI	CTNAG	2 cut(s)	144, 407
DpnI	GATC	5 cut(s)	149, 600, 605, 831, 982
DpnII	GATC	5 cut(s)	147, 598, 603, 829, 980
EciI	GGCGGA	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	538
Eco31I	GGTCTC	1 cut(s)	929
Eco47I	GGWCC	3 cut(s)	100, 127, 793
Eco53kI	GAGCTC	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRI	GAATTC	2 cut(s)	770, 842
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	927
EcoT38I	GRGCYC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	6 cut(s)	281, 422, 449, 569, 788, 929
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	6 cut(s)	277, 418, 445, 565, 784, 925
FauI	CCCGC	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	3 cut(s)	86, 372, 705
FriOI	GRGCYC	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	3 cut(s)	294, 314, 624
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	1 cut(s)	155
GsuI	CTGGAG	2 cut(s)	224, 933
HaeIII	GGCC	2 cut(s)	115, 216
HapII	CCGG	3 cut(s)	116, 389, 642
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	6 cut(s)	281, 422, 449, 569, 788, 929
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	4 cut(s)	415, 474, 509, 958
HpaII	CCGG	3 cut(s)	116, 389, 642
HphI	GGTGA	2 cut(s)	775, 990
Hpy166II	GTNNAC	2 cut(s)	809, 899
Hpy188III	TCNNGA	4 cut(s)	389, 419, 955, 976
Hpy8I	GTNNAC	2 cut(s)	809, 899
HpyAV	CCTTC	3 cut(s)	194, 806, 961
HpyCH4III	ACNGT	2 cut(s)	521, 711
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	7 cut(s)	24, 29, 299, 465, 565, 809, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 199
HpyF3I	CTNAG	2 cut(s)	144, 407
HpySE526I	ACGT	1 cut(s)	88
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	281, 422, 449, 569, 788, 929
HspAI	GCGC	1 cut(s)	426
Kpn2I	TCCGGA	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	147, 598, 603, 829, 980
LmnI	GCTCC	5 cut(s)	205, 533, 781, 914, 953
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	38, 912
MaeI	CTAG	3 cut(s)	294, 314, 624
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	763, 1003
MalI	GATC	5 cut(s)	149, 600, 605, 831, 982
MboI	GATC	5 cut(s)	147, 598, 603, 829, 980
MboII	GAAGA	5 cut(s)	22, 172, 515, 566, 838
MflI	RGATCY	2 cut(s)	147, 980
MhlI	GDGCHC	3 cut(s)	538, 811, 950
MluCI	AATT	6 cut(s)	196, 301, 770, 842, 870, 991
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	7 cut(s)	44, 91, 258, 300, 371, 404, 627
Mph1103I	ATGCAT	1 cut(s)	927
MroI	TCCGGA	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	8 cut(s)	5, 210, 516, 687, 743, 776, 941, 1030
MslI	CAYNNNNRTG	2 cut(s)	906, 930
MspI	CCGG	3 cut(s)	116, 389, 642
MspR9I	CCNGG	2 cut(s)	63, 117
Mva1269I	GAATGC	3 cut(s)	26, 428, 467
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	834
MwoI	GCNNNNNNNGC	2 cut(s)	121, 199
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	147, 598, 603, 829, 980
NlaIII	CATG	6 cut(s)	281, 422, 449, 569, 788, 929
NmuCI	GTSAC	1 cut(s)	763
NsiI	ATGCAT	1 cut(s)	927
NspI	RCATGY	1 cut(s)	929
PagI	TCATGA	1 cut(s)	418
PctI	GAATGC	3 cut(s)	26, 428, 467
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	415, 474, 958
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PsiI	TTATAA	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspPI	GGNCC	4 cut(s)	100, 127, 215, 793
PsuI	RGATCY	2 cut(s)	147, 980
RsaI	GTAC	1 cut(s)	868
RsaNI	GTAC	1 cut(s)	867
RseI	CAYNNNNRTG	2 cut(s)	906, 930
SacI	GAGCTC	1 cut(s)	538
SaqAI	TTAA	8 cut(s)	5, 210, 516, 687, 743, 776, 941, 1030
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	5 cut(s)	147, 598, 603, 829, 980
Sau96I	GGNCC	4 cut(s)	100, 127, 215, 793
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	63, 117
SduI	GDGCHC	3 cut(s)	538, 811, 950
SfaNI	GCATC	2 cut(s)	38, 912
SinI	GGWCC	3 cut(s)	100, 127, 793
SmiMI	CAYNNNNRTG	2 cut(s)	906, 930
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	6 cut(s)	196, 301, 770, 842, 870, 991
SsiI	CCGC	5 cut(s)	469, 530, 578, 834, 892
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	3 cut(s)	294, 314, 624
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	61, 115
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	521, 711
TaiI	ACGT	1 cut(s)	91
TasI	AATT	6 cut(s)	196, 301, 770, 842, 870, 991
TfiI	GAWTC	3 cut(s)	415, 474, 958
Tru1I	TTAA	8 cut(s)	5, 210, 516, 687, 743, 776, 941, 1030
Tru9I	TTAA	8 cut(s)	5, 210, 516, 687, 743, 776, 941, 1030
TscAI	CASTG	2 cut(s)	31, 901
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	4 cut(s)	435, 474, 855, 864
TspRI	CASTG	2 cut(s)	31, 901
VneI	GTGCAC	1 cut(s)	807
VpaK11BI	GGWCC	3 cut(s)	100, 127, 793
XapI	RAATTY	2 cut(s)	770, 842
XceI	RCATGY	1 cut(s)	929
XmaJI	CCTAGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	3 cut(s)	294, 314, 624
ZraI	GACGTC	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.