Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0021313

Physical Location & Seq

Genomic Coordinates Forward (+)

9214935 .. 9215905

Gene Structure 971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTAAAGAAGGATTCAGAATGCACTTCATCCGCTTCAAAATGGGATGGAGGAATGTCCCCTGGCATCATACTGGATGATGTAATCAGAAGTCTCACAGAGGTCCGATCGGCAAGGCCGGGGAAGCAGGTCCATCTCTTGCAGTCTGAGATCCAACAGCTTTGTATAGCTTCCAAAGAAATCTTCCTTCAACAACCCAATTTGCTGGAGCTTAAAGGCCCTGTACGTGGTTATGTGGATTATGGGAAGCAAAGCATAGAAACAATGTGCCTCTTGCTTGCTTATAAGATTAAACATTCGGAGAACTTCTTTCTCCTTAGAGGGAATCATGAATGTGCTTCTATCAACCTAAAACATGGATTTTATGATGAATGCAAGCGGAGATTCAATGCGAGAATATGGAAATGCTTCAATGACTCTTTTAACTGTCTTCCTGCGGGAGCTCTTGTAGATGACAGAATATTATGTGTGCATGGTGGTCTTTCGCCCGATTTGGAGAACTTGGATCAGATCAGAAACTTGCCTCGTCCTAGTAATGTCCCTGGTAACGGCTTGCTTTGTGATTTGCTCTGGTCAAGTCCTTGTAGTGATGTTAAGGGATGGGGAACGAACAAACACTCGGAACACATTGAAGTCCCATTCTCTTACTTAACTTTTGGCTCTGATAAGGTGACAGAATTCTTAATGAAGCATGATTTGGACCTTCTTTGTTGTGCACAACAGGTTGCACACTTTCCCTTTAACCCTTTCAATCTGCTAGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

255

Amino Acids

28.74

Weight (kDa)

6.3

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	25 - 72	5e-18	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	78 - 239	4.6e-27	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021313)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368681
rosa_roxburghii	Rroxscaffold_4G00288360
rosa_samantha	Rh1BG314700 Rh1CG329500 Rh1DG346300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	118
AciI	CCGC	3 cut(s)	33, 379, 437
AclWI	GGATC	2 cut(s)	145, 513
AcsI	RAATTY	1 cut(s)	677
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	227, 548
AgsI	TTSAA	6 cut(s)	39, 191, 388, 412, 632, 751
AjnI	CCWGG	2 cut(s)	61, 541
AjuI	GAANNNNNNNTTGG	4 cut(s)	167, 199, 680, 712
AluBI	AGCT	4 cut(s)	160, 170, 211, 443
AluI	AGCT	4 cut(s)	160, 170, 211, 443
Alw21I	GWGCWC	2 cut(s)	445, 718
Alw26I	GTCTC	1 cut(s)	98
Alw44I	GTGCAC	1 cut(s)	714
AlwI	GGATC	2 cut(s)	145, 513
AoxI	GGCC	2 cut(s)	116, 217
ApaLI	GTGCAC	1 cut(s)	714
ApoI	RAATTY	1 cut(s)	677
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	4 cut(s)	103, 130, 218, 700
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	682
AvaII	GGWCC	3 cut(s)	103, 130, 700
BaeGI	GKGCMC	1 cut(s)	718
BanII	GRGCYC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	2 cut(s)	445, 718
BccI	CCATC	3 cut(s)	41, 141, 594
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	2 cut(s)	63, 543
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	3 cut(s)	531, 758, 766
BfuAI	ACCTGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	63, 120, 543
Bme18I	GGWCC	3 cut(s)	103, 130, 700
BmgT120I	GGNCC	4 cut(s)	103, 130, 218, 700
BmrFI	CCNGG	3 cut(s)	63, 120, 543
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	227
BsaJI	CCNNGG	3 cut(s)	61, 119, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 548
Bse1I	ACTGG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	63, 543
BseDI	CCNNGG	3 cut(s)	61, 119, 541
BseGI	GGATG	4 cut(s)	29, 52, 82, 605
BseLI	CCNNNNNNNGG	2 cut(s)	227, 548
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	718
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	118, 219
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	445, 718
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	3 cut(s)	43, 524, 620
BslI	CCNNNNNNNGG	2 cut(s)	227, 548
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	3 cut(s)	43, 524, 620
BsmI	GAATGC	2 cut(s)	26, 377
BsnI	GGCC	2 cut(s)	118, 219
Bsp1286I	GDGCHC	2 cut(s)	445, 718
Bsp143I	GATC	4 cut(s)	107, 150, 505, 510
BspACI	CCGC	3 cut(s)	33, 379, 437
BspANI	GGCC	2 cut(s)	118, 219
BspCNI	CTCAG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	145, 513
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	61, 119, 541
BssMI	GATC	4 cut(s)	107, 150, 505, 510
Bst2UI	CCWGG	2 cut(s)	63, 543
Bst4CI	ACNGT	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	279, 377, 554
BstDEI	CTNAG	2 cut(s)	147, 317
BstF5I	GGATG	4 cut(s)	29, 52, 82, 605
BstKTI	GATC	4 cut(s)	110, 153, 508, 513
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	4 cut(s)	107, 150, 505, 510
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	2 cut(s)	63, 543
BstSCI	CCNGG	3 cut(s)	61, 118, 541
BstSLI	GKGCMC	1 cut(s)	718
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	118, 219
BtsCI	GGATG	4 cut(s)	29, 52, 82, 605
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	279, 377, 554
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	4 cut(s)	103, 130, 218, 700
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	4 cut(s)	329, 356, 473, 692
CviJI	RGCY	9 cut(s)	118, 160, 170, 211, 219, 443, 552, 660, 764
CviKI_1	RGCY	9 cut(s)	118, 160, 170, 211, 219, 443, 552, 660, 764
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	147, 317
DpnI	GATC	4 cut(s)	109, 152, 507, 512
DpnII	GATC	4 cut(s)	107, 150, 505, 510
Ecl136II	GAGCTC	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	445
Eco47I	GGWCC	3 cut(s)	103, 130, 700
Eco53kI	GAGCTC	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	2 cut(s)	61, 541
EcoT38I	GRGCYC	1 cut(s)	445
FaeI	CATG	4 cut(s)	332, 359, 476, 695
FaqI	GGGAC	3 cut(s)	43, 524, 620
FatI	CATG	4 cut(s)	328, 355, 472, 691
FauI	CCCGC	1 cut(s)	430
FokI	GGATG	4 cut(s)	16, 59, 89, 612
FriOI	GRGCYC	1 cut(s)	445
FspBI	CTAG	3 cut(s)	531, 758, 766
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	118, 219
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	4 cut(s)	332, 359, 476, 695
HinfI	GANTC	4 cut(s)	14, 325, 384, 416
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	1 cut(s)	716
Hpy188I	TCNGA	9 cut(s)	19, 89, 107, 148, 301, 510, 515, 622, 664
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	716
HpyAV	CCTTC	3 cut(s)	4, 197, 713
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	6 cut(s)	24, 142, 375, 472, 716, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	147, 317
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	4 cut(s)	332, 359, 476, 695
Kzo9I	GATC	4 cut(s)	107, 150, 505, 510
LmnI	GCTCC	2 cut(s)	208, 440
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	3 cut(s)	531, 758, 766
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	545, 670
MalI	GATC	4 cut(s)	109, 152, 507, 512
MboI	GATC	4 cut(s)	107, 150, 505, 510
MboII	GAAGA	2 cut(s)	175, 422
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	445, 718
MluCI	AATT	2 cut(s)	199, 677
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	44, 94, 281, 314, 534
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	8 cut(s)	5, 213, 291, 423, 594, 650, 683, 741
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	3 cut(s)	63, 120, 543
Mva1269I	GAATGC	2 cut(s)	26, 377
MvaI	CCWGG	2 cut(s)	63, 543
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	4 cut(s)	107, 150, 505, 510
NlaIII	CATG	4 cut(s)	332, 359, 476, 695
NmuCI	GTSAC	1 cut(s)	670
PagI	TCATGA	1 cut(s)	328
PctI	GAATGC	2 cut(s)	26, 377
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	3 cut(s)	14, 325, 384
Ple19I	CGATCG	1 cut(s)	110
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	61, 541
PspGI	CCWGG	2 cut(s)	61, 541
PspPI	GGNCC	4 cut(s)	103, 130, 218, 700
PsuI	RGATCY	1 cut(s)	150
PvuI	CGATCG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	445
SaqAI	TTAA	8 cut(s)	5, 213, 291, 423, 594, 650, 683, 741
Sau3AI	GATC	4 cut(s)	107, 150, 505, 510
Sau96I	GGNCC	4 cut(s)	103, 130, 218, 700
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	63, 120, 543
SduI	GDGCHC	2 cut(s)	445, 718
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	3 cut(s)	103, 130, 700
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	199, 677
SsiI	CCGC	3 cut(s)	33, 379, 437
SspI	AATATT	1 cut(s)	462
SspMI	CTAG	3 cut(s)	531, 758, 766
SstI	GAGCTC	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	61, 118, 541
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	1 cut(s)	229
TasI	AATT	2 cut(s)	199, 677
TfiI	GAWTC	3 cut(s)	14, 325, 384
Tru1I	TTAA	8 cut(s)	5, 213, 291, 423, 594, 650, 683, 741
Tru9I	TTAA	8 cut(s)	5, 213, 291, 423, 594, 650, 683, 741
TseFI	GTSAC	1 cut(s)	670
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	4 cut(s)	18, 345, 384, 701
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	3 cut(s)	103, 130, 700
XapI	RAATTY	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	3 cut(s)	531, 758, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.