Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0021313

Physical Location & Seq

Genomic Coordinates Reverse (-)

60369812 .. 60370186

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG329500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTGCCTCTTGCTTGCTTATAAAATCAAACATCCGGAGAACTTCTTTCTCCTTAGAGGGAATCATGAATGTGCTTCTATCAACCTAAAACATGGATTTTATGATGAATGCAAGCGGAGATTCAATGTGAGAATATGGAAATGCTTCAATGACTCTTTTAACTGTCTTCCTGCGGGAGCTCTTGTAGATGACAGAATATTATGTGTGCATGGTGGTCTTTCGCCCGATTTGGAGAACTTGGATCAGATCAGAAACTTGCCTCGTCCTAGTAATGTTCTTGATACTGGCTTGCTTTGTGATTTGCTCTGGTCAAGTCCTTGCAGAGATGTTAAGGGATGGGGAACGAACAAACACTCGGATCACACTTCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

124

Amino Acids

14.21

Weight (kDa)

7.62

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	3 - 117	6e-22	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0021313)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368681
rosa_roxburghii	Rroxscaffold_4G00288360
rosa_samantha	Rh1BG314700 Rh1CG329500 Rh1DG346300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	2 cut(s)	115, 173
AclWI	GGATC	2 cut(s)	249, 366
AgsI	TTSAA	2 cut(s)	124, 148
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	249, 366
Aor13HI	TCCGGA	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	181
BccI	CCATC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bse1I	ACTGG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	34
BseGI	GGATG	2 cut(s)	31, 341
BseNI	ACTGG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	241, 246, 358
BspACI	CCGC	2 cut(s)	115, 173
BspEI	TCCGGA	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	64
BspPI	GGATC	2 cut(s)	249, 366
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	3 cut(s)	241, 246, 358
Bst4CI	ACNGT	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	15, 113, 290
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	31, 341
BstKTI	GATC	3 cut(s)	244, 249, 361
BstMBI	GATC	3 cut(s)	241, 246, 358
BstV2I	GAAGAC	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	31, 341
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	3 cut(s)	15, 113, 290
CciI	TCATGA	1 cut(s)	64
CviAII	CATG	3 cut(s)	65, 92, 209
CviJI	RGCY	2 cut(s)	179, 288
CviKI_1	RGCY	2 cut(s)	179, 288
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	243, 248, 360
DpnII	GATC	3 cut(s)	241, 246, 358
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	3 cut(s)	68, 95, 212
FaiI	YATR	7 cut(s)	21, 66, 93, 102, 136, 202, 210
FatI	CATG	3 cut(s)	64, 91, 208
FauI	CCCGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	18, 348
FriOI	GRGCYC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	267
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	3 cut(s)	68, 95, 212
HinfI	GANTC	3 cut(s)	61, 120, 152
HpaII	CCGG	1 cut(s)	35
Hpy188I	TCNGA	3 cut(s)	246, 251, 358
Hpy188III	TCNNGA	3 cut(s)	35, 65, 278
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	111, 208, 321
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	68, 95, 212
Kpn2I	TCCGGA	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	241, 246, 358
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	4 cut(s)	48, 183, 270, 292
MaeI	CTAG	1 cut(s)	267
MalI	GATC	3 cut(s)	243, 248, 360
MboI	GATC	3 cut(s)	241, 246, 358
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	17, 50, 270
MroI	TCCGGA	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	159, 330
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	113
NdeII	GATC	3 cut(s)	241, 246, 358
NlaIII	CATG	3 cut(s)	68, 95, 212
PagI	TCATGA	1 cut(s)	64
PctI	GAATGC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	61, 120
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PsiI	TTATAA	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	159, 330
Sau3AI	GATC	3 cut(s)	241, 246, 358
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	2 cut(s)	87, 181
SmiMI	CAYNNNNRTG	1 cut(s)	69
SsiI	CCGC	2 cut(s)	115, 173
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	61, 120
Tru1I	TTAA	2 cut(s)	159, 330
Tru9I	TTAA	2 cut(s)	159, 330
TspDTI	ATGAA	2 cut(s)	81, 120
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.