RchiOBHm_Chr1g0369031

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013405
Physical Location & Seq
Reverse (-)
58947509 .. 58949534
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1284 bp
ATGAGGAAGCTTTGTCCCAACTTGGACCGTGAAGACGGCTTGGAAACTGTTCTGGAGGTTCCAGTCCCAGAAGAGATATTCTCTCCTACTAACAAAAGCCCCAAAATTTCATGGCAGAACATGAAGTCGTGGATGAAATCATCAAACACAGAGCATTCAACTGTATTTGGAAGCAAAAGCGCCGAGATCCAACTCTTGCTTGGAGTTATTGGAGCTCCACTGATTCCTATTTCTATTCCTAACAACGATCACCAACCCATCAATCGCAACCTCAAGGATCAACCCATTGAGGCTTCAATGGCTAAATACTTAGTGAAGCAATACATAGCTGCAGTGGGTGGAGAGACGGCCTTGAACTCCATAGACAGCATGTATGCAATGGGAAAGGTGAAGATGGCAGCTTCAGAGTTTTGTACTGGGGAAGGAAAGTTGAATAGTCCCAAGGGGAAAATGAAGAACTTGAAGTCACTTGGGAGTGGTGAAATGGGAGGGTTTGTACTGTGGCAGAAGAGGCCAGAGCTGTGGTGCTTGGAACTAGTGGTATCTGGCTGCAAGATTAGCGCCGGGAGTGATGGCAAGGTGGCTTGGCGACAAACCCCCTGGCATCACTCCCATGCTTCCCGAGGCCCGCCTCGTCCCCTCAGGCGTCTTCTTCAGGGTCTTGATCCGAGGTCAACTGCAAATTTATTCAGCAATTCCGTTTGCATTGGAGAGAAACCAATCAACGACGAAGACTGCTTCATATTAAAACTCGAAGCCGAATCCTCAACGCTCCAAGCAAGAAGCAGCAGCAACGTAGATATAATACGACACACCGTTTGGGGATACTTCAGCCAGAGGACAGGTCTCCTGGTCCAACTAGAAGACTCCCACCTCCTGAGAATCAAAACCTCCGGCAACGACAGCATTTTCTGGGAAACCACAATGGAGTCATACATTCAAGACTACAGAACCGTCGACGGCATTAACATTGCACATTCGGGGAGGACAAGCGTGTCGTTGGTCAGGTTTGGCGAGAGCAATGTAGCGCATTCGAGGACTCGGATGGAAGAGATTTGGGACATTGAGGAAGTTGATTTCAACATTAAGGGTTTGTCCAAGGATTGCTTCTTGCCTCCTGGTGACTTGAAGAAAGAGGAGGAAGGAGGGATGGTGACTAATACCAACGCAAAATTACCGCTCAGGATTTTATCTTCTTCGAGAATTCGAGCTTCGAAAATAGCAGCCATTGATGTTTATGATGATGATTCAGAAAGCAGTGGAAGTAGTGACCAAGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

427

Amino Acids

47.34

Weight (kDa)

6.19

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 124 - 373 5e-125 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05840
fragaria_vesca FvH4_7g23730 FvH4_7g23730 FvH4_7g23730
malus_domestica MD01G1144500.v1.1
prunus_persica Prupe.2G243900_v2.0.a1
pyrus_communis pycom01g16410 pycom07g19460
rosa_chinensis RchiOBHm_Chr1g0369031
rosa_laevigata RLG00000027163
rosa_multiflora Rmu_sc0004250.1_g000029
rosa_roxburghii Rroxscaffold_4G00288070
rosa_rugosa Rorug01G0347000
rosa_samantha Rh1AG354100 Rh1BG317500 Rh1CG332000 Rh1DG348400
rosa_wichuraiana Rw1G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 994
AccBSI CCGCTC 1 cut(s) 1180
AccI GTMKAC 1 cut(s) 957
AciI CCGC 2 cut(s) 629, 1178
AclWI GGATC 3 cut(s) 181, 285, 659
AcsI RAATTY 3 cut(s) 105, 682, 1203
AcuI CTGAAG 3 cut(s) 387, 638, 814
AcyI GRCGYC 1 cut(s) 646
AfaI GTAC 2 cut(s) 415, 498
AgsI TTSAA 8 cut(s) 159, 297, 355, 433, 463, 941, 1081, 1129
AhlI ACTAGT 1 cut(s) 535
AjnI CCWGG 3 cut(s) 599, 849, 1117
AjuI GAANNNNNNNTTGG 2 cut(s) 1091, 1123
AluBI AGCT 6 cut(s) 10, 215, 329, 401, 520, 1211
AluI AGCT 6 cut(s) 10, 215, 329, 401, 520, 1211
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 338, 851
AlwI GGATC 3 cut(s) 181, 285, 659
Ama87I CYCGRG 1 cut(s) 621
AoxI GGCC 3 cut(s) 348, 512, 625
ApeKI GCWGC 6 cut(s) 329, 398, 549, 786, 789, 1223
ApoI RAATTY 3 cut(s) 105, 682, 1203
ArsI GACNNNNNNTTYG 2 cut(s) 801, 833
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 3 cut(s) 182, 563, 1030
AspS9I GGNCC 3 cut(s) 25, 626, 853
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 5 cut(s) 242, 400, 491, 1133, 1165
AsuII TTCGAA 1 cut(s) 1214
AvaI CYCGRG 1 cut(s) 621
AvaII GGWCC 2 cut(s) 25, 853
AxyI CCTNAGG 1 cut(s) 641
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 4 cut(s) 39, 641, 738, 870
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 6 cut(s) 316, 410, 536, 798, 801, 1235
BccI CCATC 5 cut(s) 266, 388, 566, 1039, 1144
BceAI ACGGC 3 cut(s) 52, 363, 976
BciT130I CCWGG 3 cut(s) 601, 851, 1119
BciVI GTATCC 1 cut(s) 818
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 338, 851
BcuI ACTAGT 1 cut(s) 535
BfaI CTAG 2 cut(s) 536, 860
BfmI CTRYAG 2 cut(s) 330, 946
BfoI RGCGCY 2 cut(s) 183, 564
BfuI GTATCC 1 cut(s) 818
BisI GCNGC 6 cut(s) 330, 399, 550, 787, 790, 1224
BlsI GCNGC 6 cut(s) 331, 400, 551, 788, 791, 1225
Bme1390I CCNGG 4 cut(s) 565, 601, 851, 1119
Bme18I GGWCC 2 cut(s) 25, 853
BmeT110I CYCGRG 1 cut(s) 621
BmgT120I GGNCC 3 cut(s) 25, 626, 853
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 4 cut(s) 565, 601, 851, 1119
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 613
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 4 cut(s) 39, 641, 738, 870
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 1181
Bpu14I TTCGAA 1 cut(s) 1214
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 565
BsaHI GRCGYC 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 851
BsaJI CCNNGG 5 cut(s) 441, 599, 622, 668, 1098
BsaXI ACNNNNNCTCC 4 cut(s) 480, 510, 1137, 1167
Bse1I ACTGG 2 cut(s) 62, 421
Bse21I CCTNAGG 1 cut(s) 641
Bse3DI GCAATG 3 cut(s) 384, 969, 1027
BseBI CCWGG 3 cut(s) 601, 851, 1119
BseDI CCNNGG 5 cut(s) 441, 599, 622, 668, 1098
BseGI GGATG 3 cut(s) 138, 1050, 1155
BseMI GCAATG 3 cut(s) 384, 969, 1027
BseMII CTCAG 3 cut(s) 655, 869, 1195
BseNI ACTGG 2 cut(s) 62, 421
BseRI GAGGAG 1 cut(s) 1151
BseXI GCAGC 6 cut(s) 316, 410, 536, 798, 801, 1235
BshFI GGCC 3 cut(s) 350, 514, 627
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 621
BsiSI CCGG 2 cut(s) 564, 894
BslFI GGGAC 4 cut(s) 50, 423, 621, 1073
BsmAI GTCTC 2 cut(s) 338, 851
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 4 cut(s) 50, 423, 621, 1073
BsmI GAATGC 2 cut(s) 154, 1030
BsnI GGCC 3 cut(s) 350, 514, 627
Bso31I GGTCTC 1 cut(s) 851
BsoBI CYCGRG 1 cut(s) 621
Bsp119I TTCGAA 1 cut(s) 1214
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 186, 247, 277, 664
BspACI CCGC 2 cut(s) 629, 1178
BspANI GGCC 3 cut(s) 350, 514, 627
BspCNI CTCAG 3 cut(s) 654, 870, 1194
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 3 cut(s) 181, 285, 659
BspT104I TTCGAA 1 cut(s) 1214
BspTNI GGTCTC 1 cut(s) 851
BsrBI CCGCTC 1 cut(s) 1180
BsrDI GCAATG 3 cut(s) 384, 969, 1027
BsrI ACTGG 2 cut(s) 62, 421
BssECI CCNNGG 5 cut(s) 441, 599, 622, 668, 1098
BssMI GATC 4 cut(s) 186, 247, 277, 664
BssNI GRCGYC 1 cut(s) 646
BssT1I CCWWGG 2 cut(s) 441, 1098
Bst2UI CCWGG 3 cut(s) 601, 851, 1119
Bst4CI ACNGT 7 cut(s) 29, 49, 163, 501, 817, 955, 1281
Bst6I CTCTTC 3 cut(s) 66, 503, 1044
BstACI GRCGYC 1 cut(s) 646
BstBI TTCGAA 1 cut(s) 1214
BstC8I GCNNGC 1 cut(s) 629
BstDEI CTNAG 4 cut(s) 310, 641, 878, 1181
BstF5I GGATG 3 cut(s) 138, 1050, 1155
BstH2I RGCGCY 2 cut(s) 183, 564
BstHHI GCGC 3 cut(s) 182, 563, 1030
BstKTI GATC 4 cut(s) 189, 250, 280, 667
BstMAI GTCTC 2 cut(s) 338, 851
BstMBI GATC 4 cut(s) 186, 247, 277, 664
BstMWI GCNNNNNNNGC 4 cut(s) 299, 511, 558, 903
BstNI CCWGG 3 cut(s) 601, 851, 1119
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 4 cut(s) 563, 599, 849, 1117
BstSFI CTRYAG 2 cut(s) 330, 946
BstV1I GCAGC 6 cut(s) 316, 410, 536, 798, 801, 1235
BstV2I GAAGAC 4 cut(s) 39, 641, 738, 870
BstX2I RGATCY 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 522
BstYI RGATCY 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 641
BsuI GTATCC 1 cut(s) 818
BsuRI GGCC 3 cut(s) 350, 514, 627
BtsCI GGATG 3 cut(s) 138, 1050, 1155
BtsI GCAGTG 2 cut(s) 339, 1264
BtsIMutI CAGTG 3 cut(s) 218, 339, 1264
Cac8I GCNNGC 1 cut(s) 629
CfoI GCGC 3 cut(s) 182, 563, 1030
Cfr13I GGNCC 3 cut(s) 25, 626, 853
CseI GACGC 1 cut(s) 635
Csp6I GTAC 2 cut(s) 414, 497
CviAII CATG 4 cut(s) 111, 121, 370, 614
CviQI GTAC 2 cut(s) 414, 497
DdeI CTNAG 4 cut(s) 310, 641, 878, 1181
DpnI GATC 4 cut(s) 188, 249, 279, 666
DpnII GATC 4 cut(s) 186, 247, 277, 664
DrdI GACNNNNNNGTC 1 cut(s) 994
DseDI GACNNNNNNGTC 1 cut(s) 994
Eam1104I CTCTTC 3 cut(s) 66, 503, 1044
EarI CTCTTC 3 cut(s) 66, 503, 1044
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 441, 1098
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 851
Eco47I GGWCC 2 cut(s) 25, 853
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 3 cut(s) 387, 638, 814
Eco81I CCTNAGG 1 cut(s) 641
Eco88I CYCGRG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 1203
EcoRII CCWGG 3 cut(s) 599, 849, 1117
EcoT14I CCWWGG 2 cut(s) 441, 1098
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 441, 1098
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 4 cut(s) 114, 124, 373, 617
FalI AAGNNNNNCTT 2 cut(s) 1091, 1123
FaqI GGGAC 4 cut(s) 50, 423, 621, 1073
FatI CATG 4 cut(s) 110, 120, 369, 613
FauI CCCGC 1 cut(s) 636
FblI GTMKAC 1 cut(s) 957
Fnu4HI GCNGC 6 cut(s) 330, 399, 550, 787, 790, 1224
FokI GGATG 3 cut(s) 145, 1057, 1162
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 6 cut(s) 330, 399, 550, 787, 790, 1224
FspBI CTAG 2 cut(s) 536, 860
GlaI GCGC 3 cut(s) 181, 562, 1029
GluI GCNGC 6 cut(s) 330, 399, 550, 787, 790, 1224
GsuI CTGGAG 1 cut(s) 74
HaeII RGCGCY 2 cut(s) 183, 564
HaeIII GGCC 3 cut(s) 350, 514, 627
HapII CCGG 2 cut(s) 564, 894
HgaI GACGC 1 cut(s) 635
HhaI GCGC 3 cut(s) 182, 563, 1030
Hin1I GRCGYC 1 cut(s) 646
Hin1II CATG 4 cut(s) 114, 124, 373, 617
Hin6I GCGC 3 cut(s) 180, 561, 1028
HinP1I GCGC 3 cut(s) 180, 561, 1028
HincII GTYRAC 2 cut(s) 675, 958
HindII GTYRAC 2 cut(s) 675, 958
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 7 cut(s) 223, 761, 866, 882, 929, 1039, 1247
HpaII CCGG 2 cut(s) 564, 894
HphI GGTGA 5 cut(s) 242, 400, 491, 1133, 1165
Hpy166II GTNNAC 2 cut(s) 675, 958
Hpy188I TCNGA 4 cut(s) 406, 669, 1044, 1252
Hpy188III TCNNGA 7 cut(s) 53, 621, 662, 877, 941, 1183, 1200
Hpy8I GTNNAC 2 cut(s) 675, 958
Hpy99I CGWCG 3 cut(s) 731, 959, 962
HpyAV CCTTC 2 cut(s) 416, 1136
HpyCH4III ACNGT 7 cut(s) 29, 49, 163, 501, 817, 955, 1281
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 6 cut(s) 332, 377, 552, 680, 705, 974
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 511, 558, 903
HpyF3I CTNAG 4 cut(s) 310, 641, 878, 1181
HpySE526I ACGT 1 cut(s) 795
Hsp92I GRCGYC 1 cut(s) 646
Hsp92II CATG 4 cut(s) 114, 124, 373, 617
HspAI GCGC 3 cut(s) 180, 561, 1028
Kzo9I GATC 4 cut(s) 186, 247, 277, 664
LmnI GCTCC 3 cut(s) 212, 220, 777
Lsp1109I GCAGC 6 cut(s) 316, 410, 536, 798, 801, 1235
LweI GCATC 1 cut(s) 613
MaeI CTAG 2 cut(s) 536, 860
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 4 cut(s) 465, 1121, 1153, 1268
MalI GATC 4 cut(s) 188, 249, 279, 666
MbiI CCGCTC 1 cut(s) 1180
MboI GATC 4 cut(s) 186, 247, 277, 664
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 5 cut(s) 105, 682, 694, 1172, 1203
MlyI GAGTC 3 cut(s) 860, 938, 1033
MmeI TCCRAC 2 cut(s) 214, 880
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 3 cut(s) 746, 966, 1086
MslI CAYNNNNRTG 1 cut(s) 612
MspI CCGG 2 cut(s) 564, 894
MspR9I CCNGG 4 cut(s) 565, 601, 851, 1119
Mva1269I GAATGC 2 cut(s) 154, 1030
MvaI CCWGG 3 cut(s) 601, 851, 1119
MwoI GCNNNNNNNGC 4 cut(s) 299, 511, 558, 903
NciI CCSGG 1 cut(s) 565
NdeII GATC 4 cut(s) 186, 247, 277, 664
NlaIII CATG 4 cut(s) 114, 124, 373, 617
NlaIV GGNNCC 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 4 cut(s) 465, 1121, 1153, 1268
NspI RCATGY 1 cut(s) 373
NspV TTCGAA 1 cut(s) 1214
PctI GAATGC 2 cut(s) 154, 1030
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 4 cut(s) 223, 761, 882, 1247
PkrI GCNGC 6 cut(s) 331, 400, 551, 788, 791, 1225
PleI GAGTC 3 cut(s) 860, 937, 1033
PpsI GAGTC 3 cut(s) 860, 937, 1033
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 599, 849, 1117
PspGI CCWGG 3 cut(s) 599, 849, 1117
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 3 cut(s) 25, 626, 853
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 2 cut(s) 415, 498
RsaNI GTAC 2 cut(s) 414, 497
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 217
SalI GTCGAC 1 cut(s) 956
SaqAI TTAA 3 cut(s) 746, 966, 1086
SatI GCNGC 6 cut(s) 330, 399, 550, 787, 790, 1224
Sau3AI GATC 4 cut(s) 186, 247, 277, 664
Sau96I GGNCC 3 cut(s) 25, 626, 853
SchI GAGTC 3 cut(s) 860, 938, 1033
ScrFI CCNGG 4 cut(s) 565, 601, 851, 1119
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 2 cut(s) 330, 946
SfuI TTCGAA 1 cut(s) 1214
SgrDI CGTCGACG 1 cut(s) 956
SinI GGWCC 2 cut(s) 25, 853
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SpeI ACTAGT 1 cut(s) 535
Sse9I AATT 5 cut(s) 105, 682, 694, 1172, 1203
SsiI CCGC 2 cut(s) 629, 1178
SspMI CTAG 2 cut(s) 536, 860
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 4 cut(s) 563, 599, 849, 1117
StyI CCWWGG 2 cut(s) 441, 1098
TaaI ACNGT 7 cut(s) 29, 49, 163, 501, 817, 955, 1281
TaiI ACGT 1 cut(s) 798
TaqI TCGA 6 cut(s) 753, 957, 1034, 1199, 1207, 1214
TasI AATT 5 cut(s) 105, 682, 694, 1172, 1203
TatI WGTACW 2 cut(s) 413, 496
TfiI GAWTC 4 cut(s) 223, 761, 882, 1247
Tru1I TTAA 3 cut(s) 746, 966, 1086
Tru9I TTAA 3 cut(s) 746, 966, 1086
TscAI CASTG 3 cut(s) 225, 339, 1264
TseFI GTSAC 4 cut(s) 465, 1121, 1153, 1268
TseI GCWGC 6 cut(s) 329, 398, 549, 786, 789, 1223
Tsp45I GTSAC 4 cut(s) 465, 1121, 1153, 1268
TspDTI ATGAA 5 cut(s) 99, 137, 149, 467, 730
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 3 cut(s) 225, 339, 1264
VpaK11BI GGWCC 2 cut(s) 25, 853
XapI RAATTY 3 cut(s) 105, 682, 1203
XceI RCATGY 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 957
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 2 cut(s) 536, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.