Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021296

Physical Location & Seq

Genomic Coordinates Reverse (-)

65303422 .. 65305505

Gene Structure 2084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATATTGATTCTGCTTTCCAAAATGTCACCAATTCTCAGCGTCATCATCTTACTGGGAATTGTAATCTCGCCTCATGTGGCTGGGCATCTGTTCGGAGGAACTGTGTGGAAGATAACTAAGGATGGAGAGGATGTTATATATGCTGTGGACTTCAACCGTCGAAAAGAAAAGCATTTGAATGGAATTAATCAGTCATCGTTTGTGCGGCCTGCTGTTCTAATAACAGAAGCCTATAATGCTTTGAACAATCAGCCTTATAGACGCCATAAGGACAGAGAATTTATAGGGACTAAAAGAAGACTCTACGATCTCAGGGAAATGTTTCACTACCTGTTGATACCTCTGGTTTTATGTTGGAACAAGGAAAGTTTGCCCTTTCCCATCTATTTCCTAACGTATGTTGCTTCTAGCACAATTGATTATGTCAAAAGTTTCCTTGAGTGGATGAGTGATGCAATGGCAAAGTCCTTTGAGACAACACGAGACAATGCTTTTATTTTGAAGCGTGTGAAACTTCTTGTTAACAAGAGCAAACTTGACAATGCTCCGGAAGGCCCAAAGGTTGTTTTAGCATCCATGGCCAGTTTGGAAGCGGGTTTTTCTCACAATATATTTGTCGAATGGGCAACTGATGCCAAGAATCTTGTGCTTTTTACAGAACGAATTCAGTTTGGCACGTTAGCTCGTATGCTTCAGGCAGACCCGCCTCCAAAAGCTGTTAAGGTTACCATGTCCAAGAGGTTGGAGAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

252

Amino Acids

28.79

Weight (kDa)

9.61

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_6	PF16661	20 - 72	1.1e-15	Metallo-beta-lactamase superfamily domain
Beta-Casp	PF10996	112 - 232	1.8e-20	Beta-Casp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021296)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378701 RchiOBHm_Chr1g0379171 RchiOBHm_Chr1g0379181 RchiOBHm_Chr1g0379341 RchiOBHm_Chr1g0379351

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	3 cut(s)	208, 596, 707
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	2 cut(s)	281, 666
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	157, 181, 247, 505
AluBI	AGCT	3 cut(s)	686, 719, 756
AluI	AGCT	3 cut(s)	686, 719, 756
Alw26I	GTCTC	2 cut(s)	470, 480
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	3 cut(s)	209, 556, 582
ApoI	RAATTY	2 cut(s)	281, 666
AseI	ATTAAT	1 cut(s)	189
Asp700I	GAANNNNTTC	2 cut(s)	324, 666
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	584
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	307
BccI	CCATC	2 cut(s)	119, 392
BcoDI	GTCTC	2 cut(s)	470, 480
BfaI	CTAG	1 cut(s)	411
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	557
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	4 cut(s)	97, 445, 584, 625
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	579
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 120, 150
Bse1I	ACTGG	2 cut(s)	60, 585
Bse3DI	GCAATG	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	4 cut(s)	130, 139, 453, 575
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	52, 328
BseNI	ACTGG	2 cut(s)	60, 585
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	3 cut(s)	211, 558, 584
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	470, 480
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	211, 558, 584
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	3 cut(s)	208, 596, 707
BspANI	GGCC	3 cut(s)	211, 558, 584
BspCNI	CTCAG	2 cut(s)	51, 327
BspEI	TCCGGA	1 cut(s)	550
BspQI	GCTCTTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	60, 585
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	106, 161
Bst6I	CTCTTC	1 cut(s)	746
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	3 cut(s)	38, 120, 314
BstDSI	CCRYGG	1 cut(s)	579
BstEII	GGTNACC	1 cut(s)	727
BstF5I	GGATG	4 cut(s)	130, 139, 453, 575
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	470, 480
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 581, 635
BstPI	GGTNACC	1 cut(s)	727
BstV2I	GAAGAC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	745
BsuRI	GGCC	3 cut(s)	211, 558, 584
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	4 cut(s)	130, 139, 453, 575
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	2 cut(s)	31, 273
CviAII	CATG	3 cut(s)	77, 580, 733
CviJI	RGCY	9 cut(s)	83, 211, 233, 256, 558, 584, 686, 719, 756
CviKI_1	RGCY	9 cut(s)	83, 211, 233, 256, 558, 584, 686, 719, 756
DdeI	CTNAG	3 cut(s)	38, 120, 314
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	746
EarI	CTCTTC	1 cut(s)	746
Eco130I	CCWWGG	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	727
EcoO65I	GGTNACC	1 cut(s)	727
EcoRI	GAATTC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	3 cut(s)	80, 583, 736
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	76, 579, 732
FauI	CCCGC	2 cut(s)	589, 714
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	4 cut(s)	137, 146, 460, 562
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	211, 558, 584
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	2 cut(s)	31, 273
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	80, 583, 736
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	3 cut(s)	10, 303, 643
HpaI	GTTAAC	1 cut(s)	526
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	151, 526
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	1 cut(s)	551
Hpy8I	GTNNAC	2 cut(s)	151, 526
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	2 cut(s)	106, 161
HpyCH4IV	ACGT	2 cut(s)	398, 680
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 581, 635
HpyF3I	CTNAG	3 cut(s)	38, 120, 314
HpySE526I	ACGT	2 cut(s)	398, 680
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	80, 583, 736
Kpn2I	TCCGGA	1 cut(s)	550
KspAI	GTTAAC	1 cut(s)	526
Kzo9I	GATC	1 cut(s)	310
LguI	GCTCTTC	1 cut(s)	746
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	9 cut(s)	41, 69, 225, 301, 332, 347, 564, 598, 683
LweI	GCATC	4 cut(s)	97, 445, 584, 625
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	2 cut(s)	398, 680
MaeIII	GTNAC	2 cut(s)	27, 727
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	124, 312
MfeI	CAATTG	1 cut(s)	417
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	6 cut(s)	33, 60, 186, 281, 417, 666
MluNI	TGGCCA	1 cut(s)	584
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	2 cut(s)	338, 726
MnlI	CCTC	6 cut(s)	84, 92, 124, 354, 720, 735
Mox20I	TGGCCA	1 cut(s)	584
MroI	TCCGGA	1 cut(s)	550
MroXI	GAANNNNTTC	2 cut(s)	324, 666
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	3 cut(s)	189, 525, 723
MslI	CAYNNNNRTG	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	584
MspI	CCGG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	239, 581, 635
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	3 cut(s)	80, 583, 736
NmuCI	GTSAC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	746
PdmI	GAANNNNTTC	2 cut(s)	324, 666
PfeI	GAWTC	2 cut(s)	10, 643
PkrI	GCNGC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	189
PspEI	GGTNACC	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	746
SaqAI	TTAA	3 cut(s)	189, 525, 723
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	1 cut(s)	297
SfaNI	GCATC	4 cut(s)	97, 445, 584, 625
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	6 cut(s)	33, 60, 186, 281, 417, 666
SsiI	CCGC	3 cut(s)	208, 596, 707
SspMI	CTAG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	106, 161
TaiI	ACGT	2 cut(s)	401, 683
TaqI	TCGA	2 cut(s)	163, 621
TasI	AATT	6 cut(s)	33, 60, 186, 281, 417, 666
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	2 cut(s)	10, 643
Tru1I	TTAA	3 cut(s)	189, 525, 723
Tru9I	TTAA	3 cut(s)	189, 525, 723
TseFI	GTSAC	1 cut(s)	27
Tsp45I	GTSAC	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	2 cut(s)	281, 666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmnI	GAANNNNTTC	2 cut(s)	324, 666
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.