Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021296

Physical Location & Seq

Genomic Coordinates Reverse (-)

65082499 .. 65089496

Gene Structure 6998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGAGGATGTTATATATGCTGTGGACTTCAACCATCGAAAAGAAAAGTAAGTGCTTGCTCTTACTTCAACTACCTGCCGTGCTTCAAATTCAAATTCAAATTCGTACAAGTGTGCATTTGAATGGAATTAATCAGTCATCGTTTGTGCGGCCTGCTGTTCTAATAACAGAAGCCTATAATGCTTTGAACAATCAGCCTTATAGACGCCATAAGGACAGAGAATTTATAGGGACTAAAAGAAGACTCTACGATCTCAGGGAAATGTTTCACTACCTGTTGATACCTCTGGTTTTATGTTGGAACAAGGAAAGTTTGCCCTTTCCCATCTATTTCCTAACGTATGTTGCTTCTAGCACAATTGATTATGTCAAAAGCTTCCTTGAGTGGATGAGTGATGCAATGGCAAAGTCCTTTGAGACAACACGAGACAATGCTTTTATTTTGAAGCGTGTGAAACTTCTTGTTAACAAGAGCAAACTTGACAATGCTCCGGAAGGCCCAAAGGTTGTTTTAGCATCCATGGCCAGTTTGGAAGCGGGTTTTTCTCACAATATATTTGTCGAATGGGCAACTGATGCCAAGAATCTTGTGCTTTTTACAGAACGAATTCAGTTTGGCACGTTAGCTCGTATGCTTCAGGCAGACCCGCCTCCAAAAGCTGTTAAGGTTACCATGTCCAAGAGTGGCTCCACGTGGTGGTGGATGCAGAGACATTTTAATCGATGGATTTACTCCTCCTACCAGTGTTGCCGTATGTTTCCCTTCTATGAAAATAATTCTGAGTGGGATGACTTCACAGTCATAAATCCGGACGATTATGTTATCAAGGATGAAGACATGAACCAAGGAGCAGCGCTTGTTGGAGGTGATATGGATGGAAAAATTGATGAAGCCTCTGCTAGTTTAATACTCGACTCAAGGCCTTCGAAAGTTGTGTCAAGTGAATTGACTGTACCAGTGAAGTGTTTACTGATATATATGGACTTTGAGGGCCGTTCTGATGCGAGATCTGTCAAATACTTAAATCGATTCTTTCCCATATGGCTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

351

Amino Acids

40.76

Weight (kDa)

8.64

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-Casp	PF10996	93 - 213	3.8e-20	Beta-Casp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021296)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378701 RchiOBHm_Chr1g0379171 RchiOBHm_Chr1g0379181 RchiOBHm_Chr1g0379341 RchiOBHm_Chr1g0379351

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	800
Acc36I	ACCTGC	1 cut(s)	85
AccB7I	CCANNNNNTGG	1 cut(s)	699
AccIII	TCCGGA	2 cut(s)	493, 811
AciI	CCGC	3 cut(s)	151, 539, 650
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	5 cut(s)	90, 96, 102, 224, 609
AcuI	CTGAAG	1 cut(s)	623
AcvI	CACGTG	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	208
AdeI	CACNNNGTG	1 cut(s)	699
AfaI	GTAC	2 cut(s)	109, 957
AfeI	AGCGCT	1 cut(s)	858
AfiI	CCNNNNNNNGG	1 cut(s)	699
AgsI	TTSAA	8 cut(s)	33, 71, 89, 95, 101, 124, 190, 448
AluBI	AGCT	3 cut(s)	378, 629, 662
AluI	AGCT	3 cut(s)	378, 629, 662
Alw26I	GTCTC	3 cut(s)	413, 423, 706
Aor13HI	TCCGGA	2 cut(s)	493, 811
Aor51HI	AGCGCT	1 cut(s)	858
AoxI	GGCC	5 cut(s)	152, 499, 525, 923, 994
ApeKI	GCWGC	1 cut(s)	854
ApoI	RAATTY	5 cut(s)	90, 96, 102, 224, 609
ArsI	GACNNNNNNTTYG	2 cut(s)	923, 955
AseI	ATTAAT	1 cut(s)	132
Asp700I	GAANNNNTTC	2 cut(s)	267, 609
AspLEI	GCGC	1 cut(s)	859
AspS9I	GGNCC	2 cut(s)	500, 994
AsuHPI	GGTGA	1 cut(s)	881
AsuII	TTCGAA	1 cut(s)	929
BalI	TGGCCA	1 cut(s)	527
BauI	CACGAG	1 cut(s)	426
BbrPI	CACGTG	1 cut(s)	696
BbsI	GAAGAC	2 cut(s)	250, 843
BbvI	GCAGC	1 cut(s)	866
BccI	CCATC	4 cut(s)	44, 335, 720, 872
BceAI	ACGGC	3 cut(s)	65, 738, 981
BcoDI	GTCTC	3 cut(s)	413, 423, 706
BfaI	CTAG	2 cut(s)	354, 903
BfoI	RGCGCY	1 cut(s)	860
BfuAI	ACCTGC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	1010
BisI	GCNGC	2 cut(s)	152, 855
BlsI	GCNGC	2 cut(s)	153, 856
BmgT120I	GGNCC	2 cut(s)	500, 994
BmiI	GGNNCC	1 cut(s)	691
BmsI	GCATC	5 cut(s)	388, 527, 568, 696, 994
BpiI	GAAGAC	2 cut(s)	250, 843
Bpu14I	TTCGAA	1 cut(s)	929
BpuEI	CTTGAG	2 cut(s)	404, 904
Bsa29I	ATCGAT	2 cut(s)	724, 1030
BsaAI	YACGTR	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	522, 847
BsaWI	WCCGGW	2 cut(s)	493, 811
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
Bse1I	ACTGG	3 cut(s)	528, 745, 959
Bse3DI	GCAATG	1 cut(s)	408
BseAI	TCCGGA	2 cut(s)	493, 811
BseCI	ATCGAT	2 cut(s)	724, 1030
BseDI	CCNNGG	2 cut(s)	522, 847
BseGI	GGATG	7 cut(s)	15, 396, 518, 711, 796, 838, 883
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	271, 774
BseNI	ACTGG	3 cut(s)	528, 745, 959
BseRI	GAGGAG	1 cut(s)	727
BseXI	GCAGC	1 cut(s)	866
BshFI	GGCC	5 cut(s)	154, 501, 527, 925, 996
BshVI	ATCGAT	2 cut(s)	724, 1030
BsiSI	CCGG	2 cut(s)	494, 812
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmAI	GTCTC	3 cut(s)	413, 423, 706
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	5 cut(s)	154, 501, 527, 925, 996
Bsp119I	TTCGAA	1 cut(s)	929
Bsp13I	TCCGGA	2 cut(s)	493, 811
Bsp143I	GATC	2 cut(s)	253, 1010
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	3 cut(s)	151, 539, 650
BspANI	GGCC	5 cut(s)	154, 501, 527, 925, 996
BspCNI	CTCAG	2 cut(s)	270, 775
BspDI	ATCGAT	2 cut(s)	724, 1030
BspEI	TCCGGA	2 cut(s)	493, 811
BspLI	GGNNCC	1 cut(s)	691
BspMI	ACCTGC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	929
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	3 cut(s)	528, 745, 959
BssECI	CCNNGG	2 cut(s)	522, 847
BssMI	GATC	2 cut(s)	253, 1010
BssNI	GRCGYC	1 cut(s)	208
BssSI	CACGAG	1 cut(s)	426
BssT1I	CCWWGG	2 cut(s)	522, 847
Bst2BI	CACGAG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	802, 955
BstACI	GRCGYC	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	696
BstBI	TTCGAA	1 cut(s)	929
BstC8I	GCNNGC	2 cut(s)	59, 156
BstDEI	CTNAG	2 cut(s)	257, 783
BstDSI	CCRYGG	1 cut(s)	522
BstEII	GGTNACC	1 cut(s)	670
BstF5I	GGATG	7 cut(s)	15, 396, 518, 711, 796, 838, 883
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	1 cut(s)	859
BstKTI	GATC	2 cut(s)	256, 1013
BstMAI	GTCTC	3 cut(s)	413, 423, 706
BstMBI	GATC	2 cut(s)	253, 1010
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 524, 578
BstPI	GGTNACC	1 cut(s)	670
BstV1I	GCAGC	1 cut(s)	866
BstV2I	GAAGAC	2 cut(s)	250, 843
BstX2I	RGATCY	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	1010
Bsu15I	ATCGAT	2 cut(s)	724, 1030
BsuRI	GGCC	5 cut(s)	154, 501, 527, 925, 996
BsuTUI	ATCGAT	2 cut(s)	724, 1030
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	7 cut(s)	15, 396, 518, 711, 796, 838, 883
BtsIMutI	CAGTG	2 cut(s)	752, 966
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	59, 156
CfoI	GCGC	1 cut(s)	859
Cfr13I	GGNCC	2 cut(s)	500, 994
ClaI	ATCGAT	2 cut(s)	724, 1030
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	108, 956
CviAII	CATG	3 cut(s)	523, 676, 841
CviQI	GTAC	2 cut(s)	108, 956
DdeI	CTNAG	2 cut(s)	257, 783
DpnI	GATC	2 cut(s)	255, 1012
DpnII	GATC	2 cut(s)	253, 1010
DraIII	CACNNNGTG	1 cut(s)	699
DrdI	GACNNNNNNGTC	1 cut(s)	800
DseDI	GACNNNNNNGTC	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	525
Eco130I	CCWWGG	2 cut(s)	522, 847
Eco147I	AGGCCT	1 cut(s)	925
Eco47III	AGCGCT	1 cut(s)	858
Eco57I	CTGAAG	1 cut(s)	623
Eco72I	CACGTG	1 cut(s)	696
Eco91I	GGTNACC	1 cut(s)	670
EcoO65I	GGTNACC	1 cut(s)	670
EcoRI	GAATTC	1 cut(s)	609
EcoT14I	CCWWGG	2 cut(s)	522, 847
ErhI	CCWWGG	2 cut(s)	522, 847
FaeI	CATG	3 cut(s)	526, 679, 844
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	522, 675, 840
FauI	CCCGC	2 cut(s)	532, 657
FauNDI	CATATG	1 cut(s)	1043
Fnu4HI	GCNGC	2 cut(s)	152, 855
FokI	GGATG	7 cut(s)	22, 403, 505, 718, 803, 845, 890
Fsp4HI	GCNGC	2 cut(s)	152, 855
FspBI	CTAG	2 cut(s)	354, 903
GlaI	GCGC	1 cut(s)	858
GluI	GCNGC	2 cut(s)	152, 855
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	5 cut(s)	154, 501, 527, 925, 996
HapII	CCGG	2 cut(s)	494, 812
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	859
Hin1I	GRCGYC	1 cut(s)	208
Hin1II	CATG	3 cut(s)	526, 679, 844
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	4 cut(s)	246, 586, 917, 1032
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	2 cut(s)	494, 812
HphI	GGTGA	1 cut(s)	881
Hpy166II	GTNNAC	3 cut(s)	27, 469, 971
Hpy188I	TCNGA	2 cut(s)	784, 1003
Hpy188III	TCNNGA	2 cut(s)	494, 812
Hpy8I	GTNNAC	3 cut(s)	27, 469, 971
HpyAV	CCTTC	3 cut(s)	491, 775, 936
HpyCH4III	ACNGT	2 cut(s)	802, 955
HpyCH4IV	ACGT	3 cut(s)	341, 623, 695
HpyCH4V	TGCA	3 cut(s)	118, 401, 709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 524, 578
HpyF3I	CTNAG	2 cut(s)	257, 783
HpySE526I	ACGT	3 cut(s)	341, 623, 695
Hsp92I	GRCGYC	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	526, 679, 844
HspAI	GCGC	1 cut(s)	857
Kpn2I	TCCGGA	2 cut(s)	493, 811
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	253, 1010
LmnI	GCTCC	3 cut(s)	496, 695, 851
Lsp1109I	GCAGC	1 cut(s)	866
LweI	GCATC	5 cut(s)	388, 527, 568, 696, 994
MaeI	CTAG	2 cut(s)	354, 903
MaeII	ACGT	3 cut(s)	341, 623, 695
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	2 cut(s)	255, 1012
MboI	GATC	2 cut(s)	253, 1010
MboII	GAAGA	2 cut(s)	255, 848
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	1 cut(s)	1010
MlsI	TGGCCA	1 cut(s)	527
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	2 cut(s)	240, 911
MmeI	TCCRAC	2 cut(s)	281, 844
MnlI	CCTC	6 cut(s)	297, 663, 748, 860, 907, 985
Mox20I	TGGCCA	1 cut(s)	527
MroI	TCCGGA	2 cut(s)	493, 811
MroXI	GAANNNNTTC	2 cut(s)	267, 609
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	6 cut(s)	132, 468, 666, 720, 908, 1025
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	527
MspI	CCGG	2 cut(s)	494, 812
MunI	CAATTG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	182, 524, 578
NcoI	CCATGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	1043
NdeII	GATC	2 cut(s)	253, 1010
NlaIII	CATG	3 cut(s)	526, 679, 844
NlaIV	GGNNCC	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	929
PceI	AGGCCT	1 cut(s)	925
PdmI	GAANNNNTTC	2 cut(s)	267, 609
PfeI	GAWTC	2 cut(s)	586, 1032
PflMI	CCANNNNNTGG	1 cut(s)	699
PkrI	GCNGC	2 cut(s)	153, 856
PleI	GAGTC	2 cut(s)	240, 911
PmaCI	CACGTG	1 cut(s)	696
PmlI	CACGTG	1 cut(s)	696
PpsI	GAGTC	2 cut(s)	240, 911
Ppu21I	YACGTR	1 cut(s)	696
PshBI	ATTAAT	1 cut(s)	132
PspCI	CACGTG	1 cut(s)	696
PspEI	GGTNACC	1 cut(s)	670
PspN4I	GGNNCC	1 cut(s)	691
PspPI	GGNCC	2 cut(s)	500, 994
PsuI	RGATCY	1 cut(s)	1010
RsaI	GTAC	2 cut(s)	109, 957
RsaNI	GTAC	2 cut(s)	108, 956
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	6 cut(s)	132, 468, 666, 720, 908, 1025
SatI	GCNGC	2 cut(s)	152, 855
Sau3AI	GATC	2 cut(s)	253, 1010
Sau96I	GGNCC	2 cut(s)	500, 994
SchI	GAGTC	2 cut(s)	240, 911
SfaNI	GCATC	5 cut(s)	388, 527, 568, 696, 994
SfuI	TTCGAA	1 cut(s)	929
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	383, 919
SmoI	CTYRAG	2 cut(s)	383, 919
SseBI	AGGCCT	1 cut(s)	925
SsiI	CCGC	3 cut(s)	151, 539, 650
SspMI	CTAG	2 cut(s)	354, 903
StuI	AGGCCT	1 cut(s)	925
StyI	CCWWGG	2 cut(s)	522, 847
TaaI	ACNGT	2 cut(s)	802, 955
TaiI	ACGT	3 cut(s)	344, 626, 698
TaqI	TCGA	6 cut(s)	39, 564, 724, 915, 929, 1030
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	586, 1032
Tru1I	TTAA	6 cut(s)	132, 468, 666, 720, 908, 1025
Tru9I	TTAA	6 cut(s)	132, 468, 666, 720, 908, 1025
TscAI	CASTG	2 cut(s)	752, 966
TseI	GCWGC	1 cut(s)	854
TspDTI	ATGAA	4 cut(s)	786, 849, 857, 906
TspRI	CASTG	2 cut(s)	752, 966
Van91I	CCANNNNNTGG	1 cut(s)	699
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	5 cut(s)	90, 96, 102, 224, 609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmnI	GAANNNNTTC	2 cut(s)	267, 609
XspI	CTAG	2 cut(s)	354, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.