Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021296

Physical Location & Seq

Genomic Coordinates Reverse (-)

65301258 .. 65303420

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGTGATCCACTGGTTATTGATACTAGCAATGCAGAGTCTTTGCCAGATGGTACTGGCTCCACGTGGTGGTGGATGCAGAGACATTTTAATCGATGGATTTACTCCTCCTTCTACCAGTGTTGCCGTATGTTTCCCTTCTATGAAAATAATTCTGAGTGGGATGACTTCACAGTCATAAATCCGGACGATTATGTTATCAAGGATGAAGACATGAACCAAGGAGCAGCGCTTGTTGGAGGTGATATGGATGGAAAAATTGATGAAGCCTCTGCTAGTTTAATACTCGACTCAAGGCCTTCGAAAGTTGTGTCAAGTGAATTGACTGTAAGTACCAGTGAAGTGTTTACTGATATATATGGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

122

Amino Acids

13.87

Weight (kDa)

4.05

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021296)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378701 RchiOBHm_Chr1g0379171 RchiOBHm_Chr1g0379181 RchiOBHm_Chr1g0379341 RchiOBHm_Chr1g0379351

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	184
AclWI	GGATC	1 cut(s)	2
AcvI	CACGTG	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	55, 334
AfeI	AGCGCT	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	2
Aor13HI	TCCGGA	1 cut(s)	184
Aor51HI	AGCGCT	1 cut(s)	231
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	302
BbrPI	CACGTG	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	3 cut(s)	44, 90, 245
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	27, 276
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	4 cut(s)	18, 61, 118, 336
Bse3DI	GCAATG	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	4 cut(s)	81, 169, 211, 256
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	4 cut(s)	18, 61, 118, 336
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	298
Bsp119I	TTCGAA	1 cut(s)	302
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	4 cut(s)	18, 61, 118, 336
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	175, 328
BstBAI	YACGTR	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	4 cut(s)	81, 169, 211, 256
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	94
BtsCI	GGATG	4 cut(s)	81, 169, 211, 256
BtsIMutI	CAGTG	3 cut(s)	11, 125, 343
CfoI	GCGC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	54, 333
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	3 cut(s)	60, 269, 298
CviKI_1	RGCY	3 cut(s)	60, 269, 298
CviQI	GTAC	2 cut(s)	54, 333
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DraIII	CACNNNGTG	1 cut(s)	69
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	298
Eco47III	AGCGCT	1 cut(s)	231
Eco72I	CACGTG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	1 cut(s)	217
FaiI	YATR	9 cut(s)	131, 144, 179, 195, 215, 248, 356, 358, 360
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	4 cut(s)	88, 176, 218, 263
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	27, 276
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	2 cut(s)	38, 290
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	3 cut(s)	121, 148, 309
HpyCH4III	ACNGT	2 cut(s)	175, 328
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	35, 79
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	65, 224
LpnPI	CCDG	5 cut(s)	42, 60, 131, 198, 349
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	2 cut(s)	27, 276
MaeII	ACGT	1 cut(s)	65
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	221
MluCI	AATT	3 cut(s)	151, 258, 320
MlyI	GAGTC	2 cut(s)	47, 284
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	3 cut(s)	118, 233, 280
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	2 cut(s)	90, 281
MspI	CCGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	2 cut(s)	46, 284
PmaCI	CACGTG	1 cut(s)	66
PmlI	CACGTG	1 cut(s)	66
PpsI	GAGTC	2 cut(s)	46, 284
Ppu21I	YACGTR	1 cut(s)	66
PspCI	CACGTG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	61
RsaI	GTAC	2 cut(s)	55, 334
RsaNI	GTAC	2 cut(s)	54, 333
SaqAI	TTAA	2 cut(s)	90, 281
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	47, 284
SetI	ASST	2 cut(s)	68, 244
SfaNI	GCATC	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
Sse9I	AATT	3 cut(s)	151, 258, 320
SseBI	AGGCCT	1 cut(s)	298
SspMI	CTAG	2 cut(s)	27, 276
StuI	AGGCCT	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	175, 328
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	94, 288, 302
TasI	AATT	3 cut(s)	151, 258, 320
Tru1I	TTAA	2 cut(s)	90, 281
Tru9I	TTAA	2 cut(s)	90, 281
TscAI	CASTG	3 cut(s)	18, 125, 343
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	4 cut(s)	159, 222, 230, 279
TspRI	CASTG	3 cut(s)	18, 125, 343
Van91I	CCANNNNNTGG	1 cut(s)	69
XspI	CTAG	2 cut(s)	27, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.