RchiOBHm_Chr0c28g0500961

Belongs to the IPP transferase family

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGGTGTCAGGAACTGATGGTATCTTGTCTGAGGCTAGATGGCTTCTTGATGCGGATCTTATTCCAAATTCCAATTCAGCAACCAGAGCAATTGGTTACAGAAACTTTATTATTATTCAAACAATCATTCTTGATTTTTTTTTCATTAGAATCTTATGCACTTTGTTATATCATGTTATGGAGTATTTGTTAGTGTGTAGGGAGCAAGGAGGTAGTTCTTCACCAAGAGAGTTCTACAACTTTTTGACTGAATTTCAAAAGGCATCTAGGTAA

Protein Analysis

90

Amino Acids

10.37

Weight (kDa)

5.68

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022579)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 67, 251
AgsI TTSAA 2 cut(s) 119, 257
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 14
ApoI RAATTY 2 cut(s) 67, 251
AsuHPI GGTGA 1 cut(s) 213
BccI CCATC 2 cut(s) 11, 33
BfaI CTAG 2 cut(s) 36, 267
BmsI GCATC 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bse8I GATNNNNATC 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 54
BseMII CTCAG 1 cut(s) 21
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 63
BssMI GATC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 14
CviAII CATG 1 cut(s) 173
CviJI RGCY 2 cut(s) 35, 43
CviKI_1 RGCY 2 cut(s) 35, 43
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
FaeI CATG 1 cut(s) 176
FaiI YATR 4 cut(s) 157, 169, 174, 179
FatI CATG 1 cut(s) 172
FspBI CTAG 2 cut(s) 36, 267
Hin1II CATG 1 cut(s) 176
HinfI GANTC 1 cut(s) 150
HphI GGTGA 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 9, 47, 131
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 1 cut(s) 97
LweI GCATC 1 cut(s) 40
MaeI CTAG 2 cut(s) 36, 267
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 210
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 55
MluCI AATT 4 cut(s) 67, 73, 90, 251
MnlI CCTC 2 cut(s) 25, 203
MunI CAATTG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 176
PfeI GAWTC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 55
Sau3AI GATC 1 cut(s) 55
SetI ASST 2 cut(s) 214, 272
SfaNI GCATC 1 cut(s) 40
SgeI CNNG 9 cut(s) 21, 37, 48, 59, 96, 143, 185, 218, 237
Sse9I AATT 4 cut(s) 67, 73, 90, 251
SsiI CCGC 1 cut(s) 53
SspMI CTAG 2 cut(s) 36, 267
TasI AATT 4 cut(s) 67, 73, 90, 251
TfiI GAWTC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 133
XapI RAATTY 2 cut(s) 67, 251
XspI CTAG 2 cut(s) 36, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.