Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0022579

Physical Location & Seq

Genomic Coordinates Reverse (-)

34551190 .. 34552566

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0198400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCACCCATCACATCAAACTTCCAATCTCTTGCCACGGATTCTCTTGATGGTTTGGTGGCTCCAAATTCTGCAACTAACCAAGTTCCCTTGCCTTTACCTGCCACCACTCCATTTCCTGAACCACCATCAGAGGAAAATACCATTACTGGGATTGCTTCCTTCTTGGACCAGTTACACCTTAAGCGCATTGCAGAAGACCCCCCTTCTGCACCTGATCGGAAAGTAAAGAAACCAAAGATCAGATCCACATCCTCTCTTGATCCGCAGCTCTCTCTTGCCCCTGCTTCGGATTGTCATCTCACTAATCAGGTTCTTGCAGGCTCTACTTCAGTGGGGAAAACCTTCACCTCTGGTAGGACCCGACCCTGTGGTCGTGGTGCCAGGGGAGGTGGTCGCGAAAGTCGTCGGAAGCCGATCCCTAATGCACCATTACCCCCAGTTCAGAGGGATACTCTTCTCAGGGAAACCCTTGCTACTACTGAAGGTTTATTTGCAGTTCAACTAATTCTTGAAGAAAATTCTCTTTCAACTGGTCTTCCGTTGGATCTTAACTTATCGAGCTATCAGTCTTTCAATCACAACATTCCACCTCTAAGCTCGGTTCTTGAAGAAGTACCTCTGATCCAATCTCAGGTCCAGACTGCCTTTCCTTCTGGAGATGTGCAAGATGGAGGCTCACACCCCCCACCCATCCTGGCTTTGGAAGCGCCGGTCAATTCTGGGTCTGTTTCTGCAATTCCTACTCACACTGAAGATGATGAGACTTCCATTAAACCTCAATCTGACCCCGATCCTCCTGGGGATCAAGGCACCGGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004366 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006072 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006638 GO:0006639 GO:0006641 GO:0006651 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010154 GO:0010344 GO:0010876 GO:0012505 GO:0016020 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0019637 GO:0019752 GO:0019915 GO:0021700 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051235 GO:0052646 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098827 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

274

Amino Acids

28.8

Weight (kDa)

4.93

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022579)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c28g0500961 RchiOBHm_Chr7g0243561
rosa_rugosa	Rorug04G0198400 Rorug07G0231400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	2 cut(s)	380, 812
AccII	CGCG	1 cut(s)	399
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	7 cut(s)	240, 257, 412, 555, 619, 788, 813
AcsI	RAATTY	2 cut(s)	67, 520
AcuI	CTGAAG	3 cut(s)	315, 504, 774
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	5 cut(s)	150, 289, 357, 634, 703
AflII	CTTAAG	1 cut(s)	182
AgeI	ACCGGT	1 cut(s)	815
AgsI	TTSAA	5 cut(s)	503, 515, 531, 577, 611
AjnI	CCWGG	3 cut(s)	383, 696, 799
AluBI	AGCT	3 cut(s)	271, 564, 600
AluI	AGCT	3 cut(s)	271, 564, 600
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	7 cut(s)	240, 257, 412, 555, 619, 788, 813
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	67, 520
AsiGI	ACCGGT	1 cut(s)	815
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	189, 712
AspS9I	GGNCC	3 cut(s)	169, 360, 637
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	3 cut(s)	169, 360, 637
BanI	GGYRCC	2 cut(s)	380, 812
BbsI	GAAGAC	2 cut(s)	204, 530
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	5 cut(s)	17, 44, 136, 665, 701
BciT130I	CCWGG	3 cut(s)	385, 698, 801
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	1 cut(s)	823
BfoI	RGCGCY	1 cut(s)	713
BfrI	CTTAAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	3 cut(s)	385, 698, 801
Bme18I	GGWCC	3 cut(s)	169, 360, 637
BmgT120I	GGNCC	3 cut(s)	169, 360, 637
BmiI	GGNNCC	4 cut(s)	63, 362, 382, 814
BmrFI	CCNGG	3 cut(s)	385, 698, 801
BmrI	ACTGGG	2 cut(s)	159, 434
BmuI	ACTGGG	2 cut(s)	159, 434
BpiI	GAAGAC	2 cut(s)	204, 530
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpmI	CTGGAG	1 cut(s)	678
BsaBI	GATNNNNATC	2 cut(s)	250, 297
BsaJI	CCNNGG	3 cut(s)	36, 384, 800
BsaWI	WCCGGW	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 289, 357, 634, 703
Bse118I	RCCGGY	2 cut(s)	712, 815
Bse1I	ACTGG	4 cut(s)	154, 172, 440, 538
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	2 cut(s)	250, 297
BseBI	CCWGG	3 cut(s)	385, 698, 801
BseDI	CCNNGG	3 cut(s)	36, 384, 800
BseGI	GGATG	2 cut(s)	251, 693
BseJI	GATNNNNATC	2 cut(s)	250, 297
BseLI	CCNNNNNNNGG	5 cut(s)	150, 289, 357, 634, 703
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	475, 647
BseNI	ACTGG	4 cut(s)	154, 172, 440, 538
BseXI	GCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	399
BshNI	GGYRCC	2 cut(s)	380, 812
BshTI	ACCGGT	1 cut(s)	815
BsiSI	CCGG	2 cut(s)	713, 816
BslI	CCNNNNNNNGG	5 cut(s)	150, 289, 357, 634, 703
BsmAI	GTCTC	1 cut(s)	758
Bsp143I	GATC	9 cut(s)	217, 240, 245, 262, 417, 547, 624, 793, 805
Bsp68I	TCGCGA	1 cut(s)	399
BspACI	CCGC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	474, 646
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	4 cut(s)	63, 362, 382, 814
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	7 cut(s)	240, 257, 412, 555, 619, 788, 813
BspT107I	GGYRCC	2 cut(s)	380, 812
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	2 cut(s)	712, 815
BsrI	ACTGG	4 cut(s)	154, 172, 440, 538
BssAI	RCCGGY	2 cut(s)	712, 815
BssECI	CCNNGG	3 cut(s)	36, 384, 800
BssMI	GATC	9 cut(s)	217, 240, 245, 262, 417, 547, 624, 793, 805
Bst2UI	CCWGG	3 cut(s)	385, 698, 801
Bst6I	CTCTTC	1 cut(s)	462
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	461, 596, 633
BstDSI	CCRYGG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	251, 693
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	2 cut(s)	189, 712
BstKTI	GATC	9 cut(s)	220, 243, 248, 265, 420, 550, 627, 796, 808
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	9 cut(s)	217, 240, 245, 262, 417, 547, 624, 793, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	707, 819
BstNI	CCWGG	3 cut(s)	385, 698, 801
BstSCI	CCNGG	3 cut(s)	383, 696, 799
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	2 cut(s)	204, 530
BstX2I	RGATCY	2 cut(s)	245, 547
BstYI	RGATCY	2 cut(s)	245, 547
BsuI	GTATCC	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	251, 693
BtsIMutI	CAGTG	2 cut(s)	339, 750
BtuMI	TCGCGA	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	189, 712
Cfr10I	RCCGGY	2 cut(s)	712, 815
Cfr13I	GGNCC	3 cut(s)	169, 360, 637
Csp6I	GTAC	1 cut(s)	617
CspAI	ACCGGT	1 cut(s)	815
CviJI	RGCY	9 cut(s)	62, 271, 324, 415, 564, 600, 678, 701, 822
CviKI_1	RGCY	9 cut(s)	62, 271, 324, 415, 564, 600, 678, 701, 822
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	3 cut(s)	461, 596, 633
DpnI	GATC	9 cut(s)	219, 242, 247, 264, 419, 549, 626, 795, 807
DpnII	GATC	9 cut(s)	217, 240, 245, 262, 417, 547, 624, 793, 805
DrdI	GACNNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco47I	GGWCC	3 cut(s)	169, 360, 637
Eco57I	CTGAAG	3 cut(s)	315, 504, 774
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRII	CCWGG	3 cut(s)	383, 696, 799
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	238, 680
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	823
GlaI	GCGC	2 cut(s)	188, 711
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	678
HaeII	RGCGCY	1 cut(s)	713
HapII	CCGG	2 cut(s)	713, 816
HhaI	GCGC	2 cut(s)	189, 712
Hin6I	GCGC	2 cut(s)	187, 710
HinP1I	GCGC	2 cut(s)	187, 710
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	713, 816
HphI	GGTGA	1 cut(s)	340
Hpy188I	TCNGA	8 cut(s)	133, 222, 245, 292, 411, 447, 624, 787
Hpy188III	TCNNGA	8 cut(s)	47, 119, 260, 398, 512, 608, 640, 657
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	5 cut(s)	172, 216, 355, 479, 663
HpyCH4V	TGCA	8 cut(s)	74, 194, 212, 320, 428, 497, 667, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	707, 819
HpyF3I	CTNAG	3 cut(s)	461, 596, 633
HspAI	GCGC	2 cut(s)	187, 710
Kzo9I	GATC	9 cut(s)	217, 240, 245, 262, 417, 547, 624, 793, 805
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	823
MaeIII	GTNAC	2 cut(s)	3, 174
MalI	GATC	9 cut(s)	219, 242, 247, 264, 419, 549, 626, 795, 807
MboI	GATC	9 cut(s)	217, 240, 245, 262, 417, 547, 624, 793, 805
MboII	GAAGA	6 cut(s)	209, 449, 527, 530, 623, 767
MflI	RGATCY	2 cut(s)	245, 547
MluCI	AATT	5 cut(s)	67, 507, 520, 718, 738
MmeI	TCCRAC	2 cut(s)	389, 525
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	3 cut(s)	183, 552, 774
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	2 cut(s)	713, 816
MspR9I	CCNGG	3 cut(s)	385, 698, 801
MvaI	CCWGG	3 cut(s)	385, 698, 801
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	707, 819
NdeII	GATC	9 cut(s)	217, 240, 245, 262, 417, 547, 624, 793, 805
NlaIV	GGNNCC	4 cut(s)	63, 362, 382, 814
NmuCI	GTSAC	1 cut(s)	3
NruI	TCGCGA	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	815
PkrI	GCNGC	1 cut(s)	270
PpuMI	RGGWCCY	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	3 cut(s)	383, 696, 799
PspGI	CCWGG	3 cut(s)	383, 696, 799
PspN4I	GGNNCC	4 cut(s)	63, 362, 382, 814
PspPI	GGNCC	3 cut(s)	169, 360, 637
PspPPI	RGGWCCY	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	245, 547
RruI	TCGCGA	1 cut(s)	399
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SaqAI	TTAA	3 cut(s)	183, 552, 774
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	9 cut(s)	217, 240, 245, 262, 417, 547, 624, 793, 805
Sau96I	GGNCC	3 cut(s)	169, 360, 637
ScrFI	CCNGG	3 cut(s)	385, 698, 801
SgrAI	CRCCGGYG	1 cut(s)	815
SinI	GGWCC	3 cut(s)	169, 360, 637
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	5 cut(s)	67, 507, 520, 718, 738
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	823
StyD4I	CCNGG	3 cut(s)	383, 696, 799
TaqI	TCGA	1 cut(s)	560
TasI	AATT	5 cut(s)	67, 507, 520, 718, 738
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	183, 552, 774
Tru9I	TTAA	3 cut(s)	183, 552, 774
TscAI	CASTG	2 cut(s)	339, 757
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	3
TspGWI	ACGGA	2 cut(s)	53, 531
TspRI	CASTG	2 cut(s)	339, 757
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	169, 360, 637
XagI	CCTNNNNNAGG	1 cut(s)	355
XapI	RAATTY	2 cut(s)	67, 520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.