Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0021292

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGAGGCGTTATTGTGGAAATTCAAGTCGGTATGGGTCCTTGTGGTGAACTCAGATATCCTGCTTATCCAGAGAGCAATGGAACATGGAAGTTTCCTGGAATTGGAGAATTTGAATGCTATGACAAGTCCATGAAAGCTTCCCTGGAAGCATCAGGAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCGGCCAGCACAATCAGTTTCCTGAAGACACCGGATTTTTCAAAAGAGATGGAACCTGGAATACCGAGTATGGACAGTTCTTCCTCGAATGCTGCAAAGGAGTATTCCAAGGAACTGGAGCTAAACTATCTGGAAAGGTAGCTGGGATTCATTGGCACTACAGAACAAGATCCCATGCTGCTGAATTAACTGCCGGCTACTATAATACTAGACGTAGAGATGGTTACATACCAACAGCAAAAATGTTCAGCAAACATGGGGTTGTATTAAACTTCACCTGCATGGAAATGAAAGATGGAGAACAGCCTGACAATGCAAATTGCTCACCTGAGGGGTTAGTCCAGCAAGTAAAGATGGCAACCAAGAGTGCTGGAATTGAACTTGCAGGAGAGAGTGCACTGGAGAGGTATGATTCTGGTGCATATGGACAAGTTTTGGCCACAAGCAGATCAGATTCCGGCAATGCGTTGAGTGCTTTCACATACCTAAGATTGAATAAACGATTGTTCGAAGGGGACAACTGGCGGAACATGGTTGAATTTGTGAAAGGCATGGCTGAAGGTGCCCGGAATAAAAGACTGTTAGAGTGTGACTCCACTGGAACCGACCTTTTTGTCGGGTTTATCAAGGAGAAGAATGTCCAGGAAGAAAAGGAAACTGTTCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

291

Amino Acids

32.26

Weight (kDa)

6.13

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 249	7.7e-104	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021292)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500421 RchiOBHm_Chr7g0206941 RchiOBHm_Chr7g0207211 RchiOBHm_Chr7g0207221
rosa_samantha	Rh7DG237700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	491
AasI	GACNNNNNNGTC	1 cut(s)	818
Acc36I	ACCTGC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	767
AciI	CCGC	1 cut(s)	730
AclWI	GGATC	1 cut(s)	369
AcoI	YGGCCR	2 cut(s)	208, 642
AcsI	RAATTY	3 cut(s)	21, 110, 743
AcuI	CTGAAG	2 cut(s)	249, 783
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	6 cut(s)	26, 116, 247, 584, 700, 743
AjnI	CCWGG	4 cut(s)	97, 144, 260, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	3 cut(s)	140, 326, 347
AluI	AGCT	3 cut(s)	140, 326, 347
Alw21I	GWGCWC	1 cut(s)	604
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	208, 642
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	2 cut(s)	297, 383
ApoI	RAATTY	3 cut(s)	21, 110, 743
Asp700I	GAANNNNTTC	1 cut(s)	864
AspS9I	GGNCC	2 cut(s)	38, 194
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	3 cut(s)	59, 472, 522
AsuII	TTCGAA	1 cut(s)	714
AvaII	GGWCC	2 cut(s)	38, 194
AxyI	CCTNAGG	1 cut(s)	534
BaeGI	GKGCMC	2 cut(s)	604, 772
BalI	TGGCCA	1 cut(s)	644
BanI	GGYRCC	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	2 cut(s)	284, 370
BccI	CCATC	4 cut(s)	248, 419, 494, 553
BciT130I	CCWGG	4 cut(s)	99, 146, 262, 848
BcnI	CCSGG	1 cut(s)	772
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	491
BisI	GCNGC	2 cut(s)	298, 384
BlsI	GCNGC	2 cut(s)	299, 385
Bme1390I	CCNGG	5 cut(s)	99, 146, 262, 772, 848
Bme18I	GGWCC	2 cut(s)	38, 194
BmgT120I	GGNCC	2 cut(s)	38, 194
BmiI	GGNNCC	5 cut(s)	39, 196, 259, 769, 808
BmrFI	CCNGG	5 cut(s)	99, 146, 262, 772, 848
BmsI	GCATC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	782, 814
BpmI	CTGGAG	2 cut(s)	342, 626
Bpu14I	TTCGAA	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	772
BsaJI	CCNNGG	2 cut(s)	144, 313
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	5 cut(s)	196, 325, 609, 731, 808
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	2 cut(s)	85, 673
BseBI	CCWGG	4 cut(s)	99, 146, 262, 848
BseDI	CCNNGG	2 cut(s)	144, 313
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	85, 673
BseMII	CTCAG	2 cut(s)	67, 525
BseNI	ACTGG	5 cut(s)	196, 325, 609, 731, 808
BseSI	GKGCMC	2 cut(s)	604, 772
BseXI	GCAGC	2 cut(s)	284, 370
BseYI	CCCAGC	1 cut(s)	347
BshFI	GGCC	2 cut(s)	210, 644
BshNI	GGYRCC	1 cut(s)	767
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	5 cut(s)	207, 237, 399, 663, 772
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	2 cut(s)	122, 299
BsnI	GGCC	2 cut(s)	210, 644
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1286I	GDGCHC	2 cut(s)	604, 772
Bsp143I	GATC	2 cut(s)	374, 653
BspACI	CCGC	1 cut(s)	730
BspANI	GGCC	2 cut(s)	210, 644
BspCNI	CTCAG	2 cut(s)	66, 526
BspLI	GGNNCC	5 cut(s)	39, 196, 259, 769, 808
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	714
BspT107I	GGYRCC	1 cut(s)	767
BsrDI	GCAATG	2 cut(s)	85, 673
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	5 cut(s)	196, 325, 609, 731, 808
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	144, 313
BssMI	GATC	2 cut(s)	374, 653
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	4 cut(s)	99, 146, 262, 848
Bst4CI	ACNGT	3 cut(s)	282, 786, 865
BstBI	TTCGAA	1 cut(s)	714
BstC8I	GCNNGC	2 cut(s)	212, 400
BstDEI	CTNAG	3 cut(s)	53, 534, 692
BstKTI	GATC	2 cut(s)	377, 656
BstMBI	GATC	2 cut(s)	374, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 767
BstNI	CCWGG	4 cut(s)	99, 146, 262, 848
BstSCI	CCNGG	5 cut(s)	97, 144, 260, 770, 846
BstSFI	CTRYAG	1 cut(s)	364
BstSLI	GKGCMC	2 cut(s)	604, 772
BstV1I	GCAGC	2 cut(s)	284, 370
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	374
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	210, 644
BtsIMutI	CAGTG	2 cut(s)	602, 801
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	212, 400
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	38, 194
CviAII	CATG	8 cut(s)	87, 133, 200, 380, 461, 487, 736, 757
CviJI	RGCY	8 cut(s)	140, 210, 326, 347, 402, 511, 644, 761
CviKI_1	RGCY	8 cut(s)	140, 210, 326, 347, 402, 511, 644, 761
DdeI	CTNAG	3 cut(s)	53, 534, 692
DpnI	GATC	2 cut(s)	376, 655
DpnII	GATC	2 cut(s)	374, 653
DrdI	GACNNNNNNGTC	1 cut(s)	818
DseDI	GACNNNNNNGTC	1 cut(s)	818
EaeI	YGGCCR	2 cut(s)	208, 642
EciI	GGCGGA	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	38, 194
Eco57I	CTGAAG	2 cut(s)	249, 783
Eco81I	CCTNAGG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	4 cut(s)	97, 144, 260, 846
EcoRV	GATATC	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	8 cut(s)	90, 136, 203, 383, 464, 490, 739, 760
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	8 cut(s)	86, 132, 199, 379, 460, 486, 735, 756
FauNDI	CATATG	1 cut(s)	628
Fnu4HI	GCNGC	2 cut(s)	298, 384
Fsp4HI	GCNGC	2 cut(s)	298, 384
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	2 cut(s)	298, 384
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	2 cut(s)	342, 626
HaeIII	GGCC	2 cut(s)	210, 644
HapII	CCGG	5 cut(s)	207, 237, 399, 663, 772
Hin1II	CATG	8 cut(s)	90, 136, 203, 383, 464, 490, 739, 760
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	5 cut(s)	203, 352, 617, 659, 797
HpaII	CCGG	5 cut(s)	207, 237, 399, 663, 772
HphI	GGTGA	3 cut(s)	59, 472, 522
Hpy166II	GTNNAC	2 cut(s)	50, 602
Hpy188I	TCNGA	2 cut(s)	56, 658
Hpy188III	TCNNGA	4 cut(s)	71, 156, 227, 336
Hpy8I	GTNNAC	2 cut(s)	50, 602
HpyAV	CCTTC	3 cut(s)	180, 710, 758
HpyCH4III	ACNGT	3 cut(s)	282, 786, 865
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	6 cut(s)	300, 486, 521, 590, 602, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 767
HpyF3I	CTNAG	3 cut(s)	53, 534, 692
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	8 cut(s)	90, 136, 203, 383, 464, 490, 739, 760
KroI	GCCGGC	1 cut(s)	398
KroNI	GCCGGC	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	374, 653
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	2 cut(s)	284, 370
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	428, 794
MalI	GATC	2 cut(s)	376, 655
MboI	GATC	2 cut(s)	374, 653
MboII	GAAGA	4 cut(s)	242, 277, 850, 863
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	2 cut(s)	604, 772
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	7 cut(s)	21, 102, 110, 389, 523, 579, 743
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	1 cut(s)	791
MnlI	CCTC	4 cut(s)	154, 299, 529, 603
Mox20I	TGGCCA	1 cut(s)	644
MroNI	GCCGGC	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	864
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	2 cut(s)	392, 473
MslI	CAYNNNNRTG	2 cut(s)	485, 491
Msp20I	TGGCCA	1 cut(s)	644
MspI	CCGG	5 cut(s)	207, 237, 399, 663, 772
MspR9I	CCNGG	5 cut(s)	99, 146, 262, 772, 848
Mva1269I	GAATGC	2 cut(s)	122, 299
MvaI	CCWGG	4 cut(s)	99, 146, 262, 848
MwoI	GCNNNNNNNGC	2 cut(s)	677, 767
NaeI	GCCGGC	1 cut(s)	400
NciI	CCSGG	1 cut(s)	772
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	2 cut(s)	374, 653
NgoMIV	GCCGGC	1 cut(s)	398
NlaIII	CATG	8 cut(s)	90, 136, 203, 383, 464, 490, 739, 760
NlaIV	GGNNCC	5 cut(s)	39, 196, 259, 769, 808
NmuCI	GTSAC	1 cut(s)	794
NspV	TTCGAA	1 cut(s)	714
PaqCI	CACCTGC	1 cut(s)	491
PctI	GAATGC	2 cut(s)	122, 299
PdiI	GCCGGC	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	4 cut(s)	203, 352, 617, 659
PfoI	TCCNGGA	2 cut(s)	97, 846
PkrI	GCNGC	2 cut(s)	299, 385
PleI	GAGTC	1 cut(s)	791
PpsI	GAGTC	1 cut(s)	791
PpuMI	RGGWCCY	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	38
Psp6I	CCWGG	4 cut(s)	97, 144, 260, 846
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	4 cut(s)	97, 144, 260, 846
PspN4I	GGNNCC	5 cut(s)	39, 196, 259, 769, 808
PspPI	GGNCC	2 cut(s)	38, 194
PspPPI	RGGWCCY	1 cut(s)	38
PsrI	GAACNNNNNNTAC	4 cut(s)	250, 266, 282, 298
PsuI	RGATCY	1 cut(s)	374
RseI	CAYNNNNRTG	2 cut(s)	485, 491
SaqAI	TTAA	2 cut(s)	392, 473
SatI	GCNGC	2 cut(s)	298, 384
Sau3AI	GATC	2 cut(s)	374, 653
Sau96I	GGNCC	2 cut(s)	38, 194
SchI	GAGTC	1 cut(s)	791
ScrFI	CCNGG	5 cut(s)	99, 146, 262, 772, 848
SduI	GDGCHC	2 cut(s)	604, 772
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	714
SinI	GGWCC	2 cut(s)	38, 194
SmiMI	CAYNNNNRTG	2 cut(s)	485, 491
Sse9I	AATT	7 cut(s)	21, 102, 110, 389, 523, 579, 743
SsiI	CCGC	1 cut(s)	730
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	5 cut(s)	97, 144, 260, 770, 846
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	282, 786, 865
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	291, 714
TasI	AATT	7 cut(s)	21, 102, 110, 389, 523, 579, 743
TfiI	GAWTC	4 cut(s)	203, 352, 617, 659
Tru1I	TTAA	2 cut(s)	392, 473
Tru9I	TTAA	2 cut(s)	392, 473
TscAI	CASTG	2 cut(s)	609, 808
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	2 cut(s)	297, 383
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	3 cut(s)	149, 344, 509
TspRI	CASTG	2 cut(s)	609, 808
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	2 cut(s)	38, 194
XapI	RAATTY	3 cut(s)	21, 110, 743
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.