Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021292

Physical Location & Seq

Genomic Coordinates Reverse (-)

24628148 .. 24629754

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18544

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGAGGCGTTATTGTGGAAATTCAAGTCGGTATGGGTCCTTGTGGTGAACTCAGATATCCTGCTTATCCAGAGAGCAATGGAACATGGAAGTTTCCTGGAATTGGAGAATTTGAATGCTATGACAAGTCCATGAAAGCTTCCCTGGAAGCATCAGGAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCGGCCAGCACAATCAGTTTCCTGAAGACACCGGATTTTTCAAAAGAGATGGAACCTGGAATACCGAGTATGGACAGTTCTTCCTCGAATGGTACTCAGAGAAGCTATTAAGGAATGGAAATAGACTCCTGGCAGCTGCAAAAGGAGTATTCCAAGGAACTGGAGCTAAACTATCTGGAAAGGTAGCTGGGATTCATTGGCACTACAGAACAAGATCCCATGCTGCTGAATTAACTGCCGGCTACTATAATACTAGACGTAGAGATGGTTACATACCAACAGCAAAAATGTTCAGCAAACATGGGGTTGTATTAAACTTCACCTGCATGGAAATGAAAGATGGAGAACAGCCTGACAATGCAAATTGCTCACCTGAGGGGTTAGTCCAGCAAGTAAAGATGGCAACCAAGAGTGCTGGAATTGAACTTGCAGGAGAGAGTGCACTGGAGAGGTATGATTCTGGTGCATATGGACAAGTTTTGGCCACAAGCAGATCAGATTCCGGCAATGCGTTGAGTGCTTTCACATACCTAAGATTGAATAAACGATTGTTCGAAGGGGACAACTGGCGGAACATGGTTGAATTTGTGAAAGGCATGGCTGAAGGTGCCCGGAATAAAAGACTGTTAGAGTGTGACTCCACTGGAACCGACCTTTTTGTCGGGTTTATCAAGGAGAAGAATGTCCAGGAAGAAAAGGAAACTGTTCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

306

Amino Acids

34.01

Weight (kDa)

6.62

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 264	4.8e-119	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021292)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500421 RchiOBHm_Chr7g0206941 RchiOBHm_Chr7g0207211 RchiOBHm_Chr7g0207221
rosa_samantha	Rh7DG237700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
AasI	GACNNNNNNGTC	1 cut(s)	863
Acc36I	ACCTGC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	812
AciI	CCGC	1 cut(s)	775
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	2 cut(s)	208, 687
AcsI	RAATTY	3 cut(s)	21, 110, 788
AcuI	CTGAAG	2 cut(s)	249, 828
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	6 cut(s)	26, 116, 247, 629, 745, 788
AjnI	CCWGG	5 cut(s)	97, 144, 260, 333, 891
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	5 cut(s)	140, 310, 341, 371, 392
AluI	AGCT	5 cut(s)	140, 310, 341, 371, 392
Alw21I	GWGCWC	1 cut(s)	649
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	2 cut(s)	208, 687
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	3 cut(s)	338, 341, 428
ApoI	RAATTY	3 cut(s)	21, 110, 788
Asp700I	GAANNNNTTC	1 cut(s)	909
AspS9I	GGNCC	2 cut(s)	38, 194
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	3 cut(s)	59, 517, 567
AsuII	TTCGAA	1 cut(s)	759
AvaII	GGWCC	2 cut(s)	38, 194
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	2 cut(s)	649, 817
BalI	TGGCCA	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	812
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	3 cut(s)	328, 350, 415
BccI	CCATC	4 cut(s)	248, 464, 539, 598
BciT130I	CCWGG	5 cut(s)	99, 146, 262, 335, 893
BcnI	CCSGG	1 cut(s)	817
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	409
BfuAI	ACCTGC	1 cut(s)	536
BisI	GCNGC	3 cut(s)	339, 342, 429
BlsI	GCNGC	3 cut(s)	340, 343, 430
Bme1390I	CCNGG	6 cut(s)	99, 146, 262, 335, 817, 893
Bme18I	GGWCC	2 cut(s)	38, 194
BmgT120I	GGNCC	2 cut(s)	38, 194
BmiI	GGNNCC	5 cut(s)	39, 196, 259, 814, 853
BmrFI	CCNGG	6 cut(s)	99, 146, 262, 335, 817, 893
BmsI	GCATC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
BpmI	CTGGAG	2 cut(s)	387, 671
Bpu14I	TTCGAA	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	817
BsaJI	CCNNGG	2 cut(s)	144, 358
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	5 cut(s)	196, 370, 654, 776, 853
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	2 cut(s)	85, 718
BseBI	CCWGG	5 cut(s)	99, 146, 262, 335, 893
BseDI	CCNNGG	2 cut(s)	144, 358
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	85, 718
BseMII	CTCAG	3 cut(s)	67, 315, 570
BseNI	ACTGG	5 cut(s)	196, 370, 654, 776, 853
BseSI	GKGCMC	2 cut(s)	649, 817
BseXI	GCAGC	3 cut(s)	328, 350, 415
BseYI	CCCAGC	1 cut(s)	392
BshFI	GGCC	2 cut(s)	210, 689
BshNI	GGYRCC	1 cut(s)	812
BsiHKAI	GWGCWC	1 cut(s)	649
BsiSI	CCGG	5 cut(s)	207, 237, 444, 708, 817
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	210, 689
Bsp119I	TTCGAA	1 cut(s)	759
Bsp1286I	GDGCHC	2 cut(s)	649, 817
Bsp143I	GATC	2 cut(s)	419, 698
BspACI	CCGC	1 cut(s)	775
BspANI	GGCC	2 cut(s)	210, 689
BspCNI	CTCAG	3 cut(s)	66, 314, 571
BspLI	GGNNCC	5 cut(s)	39, 196, 259, 814, 853
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	759
BspT107I	GGYRCC	1 cut(s)	812
BsrDI	GCAATG	2 cut(s)	85, 718
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	5 cut(s)	196, 370, 654, 776, 853
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	144, 358
BssMI	GATC	2 cut(s)	419, 698
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	5 cut(s)	99, 146, 262, 335, 893
Bst4CI	ACNGT	3 cut(s)	282, 831, 910
BstBI	TTCGAA	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	212, 445
BstDEI	CTNAG	4 cut(s)	53, 301, 579, 737
BstKTI	GATC	2 cut(s)	422, 701
BstMBI	GATC	2 cut(s)	419, 698
BstMWI	GCNNNNNNNGC	2 cut(s)	722, 812
BstNI	CCWGG	5 cut(s)	99, 146, 262, 335, 893
BstSCI	CCNGG	6 cut(s)	97, 144, 260, 333, 815, 891
BstSFI	CTRYAG	1 cut(s)	409
BstSLI	GKGCMC	2 cut(s)	649, 817
BstV1I	GCAGC	3 cut(s)	328, 350, 415
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	419
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	210, 689
BtsIMutI	CAGTG	2 cut(s)	647, 846
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	212, 445
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	38, 194
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	8 cut(s)	87, 133, 200, 425, 506, 532, 781, 802
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	4 cut(s)	53, 301, 579, 737
DpnI	GATC	2 cut(s)	421, 700
DpnII	GATC	2 cut(s)	419, 698
DrdI	GACNNNNNNGTC	1 cut(s)	863
DseDI	GACNNNNNNGTC	1 cut(s)	863
EaeI	YGGCCR	2 cut(s)	208, 687
EciI	GGCGGA	1 cut(s)	790
Eco130I	CCWWGG	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	38, 194
Eco57I	CTGAAG	2 cut(s)	249, 828
Eco81I	CCTNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	5 cut(s)	97, 144, 260, 333, 891
EcoRV	GATATC	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	8 cut(s)	90, 136, 203, 428, 509, 535, 784, 805
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	8 cut(s)	86, 132, 199, 424, 505, 531, 780, 801
FauNDI	CATATG	1 cut(s)	673
Fnu4HI	GCNGC	3 cut(s)	339, 342, 429
Fsp4HI	GCNGC	3 cut(s)	339, 342, 429
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	3 cut(s)	339, 342, 429
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	2 cut(s)	387, 671
HaeIII	GGCC	2 cut(s)	210, 689
HapII	CCGG	5 cut(s)	207, 237, 444, 708, 817
Hin1II	CATG	8 cut(s)	90, 136, 203, 428, 509, 535, 784, 805
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	6 cut(s)	203, 330, 397, 662, 704, 842
HpaII	CCGG	5 cut(s)	207, 237, 444, 708, 817
HphI	GGTGA	3 cut(s)	59, 517, 567
Hpy166II	GTNNAC	2 cut(s)	50, 647
Hpy188I	TCNGA	3 cut(s)	56, 304, 703
Hpy188III	TCNNGA	4 cut(s)	71, 156, 227, 381
Hpy8I	GTNNAC	2 cut(s)	50, 647
HpyAV	CCTTC	3 cut(s)	180, 755, 803
HpyCH4III	ACNGT	3 cut(s)	282, 831, 910
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	6 cut(s)	344, 531, 566, 635, 647, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	722, 812
HpyF3I	CTNAG	4 cut(s)	53, 301, 579, 737
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	8 cut(s)	90, 136, 203, 428, 509, 535, 784, 805
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	419, 698
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	3 cut(s)	328, 350, 415
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	473, 839
MalI	GATC	2 cut(s)	421, 700
MboI	GATC	2 cut(s)	419, 698
MboII	GAAGA	4 cut(s)	242, 277, 895, 908
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	2 cut(s)	649, 817
MlsI	TGGCCA	1 cut(s)	689
MluCI	AATT	7 cut(s)	21, 102, 110, 434, 568, 624, 788
MluNI	TGGCCA	1 cut(s)	689
MlyI	GAGTC	2 cut(s)	324, 836
MnlI	CCTC	4 cut(s)	154, 299, 574, 648
Mox20I	TGGCCA	1 cut(s)	689
MroNI	GCCGGC	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	909
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	3 cut(s)	314, 437, 518
MslI	CAYNNNNRTG	2 cut(s)	530, 536
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	5 cut(s)	207, 237, 444, 708, 817
MspR9I	CCNGG	6 cut(s)	99, 146, 262, 335, 817, 893
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	5 cut(s)	99, 146, 262, 335, 893
MwoI	GCNNNNNNNGC	2 cut(s)	722, 812
NaeI	GCCGGC	1 cut(s)	445
NciI	CCSGG	1 cut(s)	817
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	2 cut(s)	419, 698
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	8 cut(s)	90, 136, 203, 428, 509, 535, 784, 805
NlaIV	GGNNCC	5 cut(s)	39, 196, 259, 814, 853
NmuCI	GTSAC	1 cut(s)	839
NspV	TTCGAA	1 cut(s)	759
PaqCI	CACCTGC	1 cut(s)	536
PctI	GAATGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	909
PfeI	GAWTC	4 cut(s)	203, 397, 662, 704
PfoI	TCCNGGA	2 cut(s)	97, 891
PkrI	GCNGC	3 cut(s)	340, 343, 430
PleI	GAGTC	2 cut(s)	324, 836
PpsI	GAGTC	2 cut(s)	324, 836
PpuMI	RGGWCCY	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	38
Psp6I	CCWGG	5 cut(s)	97, 144, 260, 333, 891
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	5 cut(s)	97, 144, 260, 333, 891
PspN4I	GGNNCC	5 cut(s)	39, 196, 259, 814, 853
PspPI	GGNCC	2 cut(s)	38, 194
PspPPI	RGGWCCY	1 cut(s)	38
PsrI	GAACNNNNNNTAC	4 cut(s)	250, 266, 282, 298
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	2 cut(s)	530, 536
SaqAI	TTAA	3 cut(s)	314, 437, 518
SatI	GCNGC	3 cut(s)	339, 342, 429
Sau3AI	GATC	2 cut(s)	419, 698
Sau96I	GGNCC	2 cut(s)	38, 194
SchI	GAGTC	2 cut(s)	324, 836
ScrFI	CCNGG	6 cut(s)	99, 146, 262, 335, 817, 893
SduI	GDGCHC	2 cut(s)	649, 817
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	759
SinI	GGWCC	2 cut(s)	38, 194
SmiMI	CAYNNNNRTG	2 cut(s)	530, 536
Sse9I	AATT	7 cut(s)	21, 102, 110, 434, 568, 624, 788
SsiI	CCGC	1 cut(s)	775
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	6 cut(s)	97, 144, 260, 333, 815, 891
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	282, 831, 910
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	291, 759
TasI	AATT	7 cut(s)	21, 102, 110, 434, 568, 624, 788
TfiI	GAWTC	4 cut(s)	203, 397, 662, 704
Tru1I	TTAA	3 cut(s)	314, 437, 518
Tru9I	TTAA	3 cut(s)	314, 437, 518
TscAI	CASTG	2 cut(s)	654, 853
TseFI	GTSAC	1 cut(s)	839
TseI	GCWGC	3 cut(s)	338, 341, 428
Tsp45I	GTSAC	1 cut(s)	839
TspDTI	ATGAA	3 cut(s)	149, 389, 554
TspRI	CASTG	2 cut(s)	654, 853
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	2 cut(s)	38, 194
XapI	RAATTY	3 cut(s)	21, 110, 788
XmnI	GAANNNNTTC	1 cut(s)	909
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.