RchiOBHm_Chr0c22g0500451
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGATAATAGATGCACTCCTAAGAGATCAGTATTCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAGAGACCGACCAACAATGAATCAGGTAGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAAAAAAACCCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.16

Weight (kDa)

9.92

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020453)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 161
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 3 cut(s) 47, 75, 140
AluI AGCT 3 cut(s) 47, 75, 140
Alw26I GTCTC 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 44, 75
AseI ATTAAT 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 56, 62
BcoDI GTCTC 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 126
BisI GCNGC 2 cut(s) 45, 76
BlsI GCNGC 2 cut(s) 46, 77
BmiI GGNNCC 1 cut(s) 163
BmsI GCATC 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 90
BseXI GCAGC 2 cut(s) 56, 62
BshNI GGYRCC 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 94
Bso31I GGTCTC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 25, 126
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 90
BssMI GATC 2 cut(s) 25, 126
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 20
BstKTI GATC 2 cut(s) 28, 129
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 25, 126
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 56, 62
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 3 cut(s) 47, 75, 140
CviKI_1 RGCY 3 cut(s) 47, 75, 140
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 27, 128
DpnII GATC 2 cut(s) 25, 126
Eco31I GGTCTC 1 cut(s) 90
FaiI YATR 1 cut(s) 143
Fnu4HI GCNGC 2 cut(s) 45, 76
Fsp4HI GCNGC 2 cut(s) 45, 76
GluI GCNGC 2 cut(s) 45, 76
HinfI GANTC 2 cut(s) 112, 149
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 14, 44, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 20
KpnI GGTACC 1 cut(s) 165
Kzo9I GATC 2 cut(s) 25, 126
LpnPI CCDG 3 cut(s) 92, 101, 180
Lsp1109I GCAGC 2 cut(s) 56, 62
LweI GCATC 1 cut(s) 200
MalI GATC 2 cut(s) 27, 128
MboI GATC 2 cut(s) 25, 126
MflI RGATCY 1 cut(s) 126
MluCI AATT 3 cut(s) 54, 181, 203
MseI TTAA 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 2 cut(s) 25, 126
NlaIV GGNNCC 1 cut(s) 163
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 112, 149
PkrI GCNGC 2 cut(s) 46, 77
PshBI ATTAAT 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 45, 76
Sau3AI GATC 2 cut(s) 25, 126
SetI ASST 4 cut(s) 49, 77, 120, 142
SfaNI GCATC 1 cut(s) 200
Sse9I AATT 3 cut(s) 54, 181, 203
TaqII GACCGA 1 cut(s) 114
TasI AATT 3 cut(s) 54, 181, 203
TfiI GAWTC 2 cut(s) 112, 149
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseI GCWGC 2 cut(s) 44, 75
TspDTI ATGAA 1 cut(s) 125
VspI ATTAAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.