Rh7BG227600
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0020453
Physical Location & Seq
Forward (+)
19717477 .. 19732681
15205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG227600.1

Sequence Viewer

Length: 318 bp
ATGATAATAGATCCGCTTATGAGAGACCAGTATTCTATTAATGCAGTTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTAGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGATACCAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAAATGGGTAGAAAGAACCCCAAGTTGAGGTACGGCTTCAGGTTTGGAAGAGAATCTGCTCGCAAAGAGCTCGGAAACTTAATCGAAGACCTTCGCCGCCAGAATCCCAATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

10.14

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020453)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c22g0500451 RchiOBHm_Chr7g0206841 RchiOBHm_Chr7g0206901 RchiOBHm_Chr7g0207191 RchiOBHm_Chr7g0207591
rosa_samantha Rh7BG227600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 298
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 223
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 3 cut(s) 75, 140, 271
AluI AGCT 3 cut(s) 75, 140, 271
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 5
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 75
AseI ATTAAT 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 18
BfuI GTATCC 1 cut(s) 154
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 126
BisI GCNGC 2 cut(s) 76, 298
BlsI GCNGC 2 cut(s) 77, 299
BmsI GCATC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 10, 126
BspACI CCGC 2 cut(s) 14, 298
BspANI GGCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 99
BssMI GATC 2 cut(s) 10, 126
Bst6I CTCTTC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 138, 262
BstKTI GATC 2 cut(s) 13, 129
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 10, 126
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 10, 126
BstYI RGATCY 2 cut(s) 10, 126
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 138, 262
Cfr10I RCCGGY 1 cut(s) 99
Csp6I GTAC 1 cut(s) 232
CviJI RGCY 5 cut(s) 75, 103, 140, 237, 271
CviKI_1 RGCY 5 cut(s) 75, 103, 140, 237, 271
CviQI GTAC 1 cut(s) 232
DpnI GATC 2 cut(s) 12, 128
DpnII GATC 2 cut(s) 10, 126
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 273
FaiI YATR 2 cut(s) 20, 143
Fnu4HI GCNGC 2 cut(s) 76, 298
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 2 cut(s) 76, 298
GluI GCNGC 2 cut(s) 76, 298
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 100
HinfI GANTC 4 cut(s) 112, 149, 254, 304
HpaII CCGG 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 51, 275
Hpy188III TCNNGA 2 cut(s) 130, 315
HpyAV CCTTC 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 44, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 10, 126
LpnPI CCDG 7 cut(s) 41, 92, 101, 113, 180, 226, 314
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 200
MalI GATC 2 cut(s) 12, 128
MboI GATC 2 cut(s) 10, 126
MboII GAAGA 2 cut(s) 261, 299
MflI RGATCY 2 cut(s) 10, 126
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 3 cut(s) 54, 181, 310
MnlI CCTC 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 39, 281
MspI CCGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 2 cut(s) 10, 126
PctI GAATGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 4 cut(s) 112, 149, 254, 304
PkrI GCNGC 2 cut(s) 77, 299
PshBI ATTAAT 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 273
PsuI RGATCY 2 cut(s) 10, 126
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 39, 281
SatI GCNGC 2 cut(s) 76, 298
Sau3AI GATC 2 cut(s) 10, 126
SduI GDGCHC 1 cut(s) 273
SetI ASST 7 cut(s) 77, 120, 142, 233, 245, 273, 294
SfaNI GCATC 1 cut(s) 200
Sse9I AATT 3 cut(s) 54, 181, 310
SsiI CCGC 2 cut(s) 14, 298
SstI GAGCTC 1 cut(s) 273
TaqI TCGA 1 cut(s) 285
TasI AATT 3 cut(s) 54, 181, 310
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 4 cut(s) 112, 149, 254, 304
Tru1I TTAA 2 cut(s) 39, 281
Tru9I TTAA 2 cut(s) 39, 281
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 125
VspI ATTAAT 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.