RchiOBHm_Chr7g0206841
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
24381226 .. 24381521
296 bp
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UTR
Exon/CDS
Intron
PRQ18513

Sequence Viewer

Length: 228 bp
ATGATAATAGATCCACTCCAGAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGACCGGCCAACAATGAATCAGGTAGTAGAGATCTTGAAGCAAGCTATACAAGATTCACAAAAGGGTACTAACTCTGTAAATAACAATTTTGGGGCATCTGGGTCTAAATTGGGTAGAAAGAACCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.22

Weight (kDa)

9.92

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020453)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 101
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 3 cut(s) 47, 75, 140
AluI AGCT 3 cut(s) 47, 75, 140
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 5
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 44, 75
AseI ATTAAT 1 cut(s) 39
BbvI GCAGC 2 cut(s) 56, 62
BcoDI GTCTC 1 cut(s) 18
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 126
BisI GCNGC 2 cut(s) 45, 76
BlsI GCNGC 2 cut(s) 46, 77
BmsI GCATC 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 56, 62
BshFI GGCC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 10, 126
BspANI GGCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 99
BssMI GATC 2 cut(s) 10, 126
BstC8I GCNNGC 1 cut(s) 138
BstKTI GATC 2 cut(s) 13, 129
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 10, 126
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 56, 62
BstX2I RGATCY 2 cut(s) 10, 126
BstYI RGATCY 2 cut(s) 10, 126
BsuRI GGCC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 99
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 4 cut(s) 47, 75, 103, 140
CviKI_1 RGCY 4 cut(s) 47, 75, 103, 140
CviQI GTAC 1 cut(s) 162
DpnI GATC 2 cut(s) 12, 128
DpnII GATC 2 cut(s) 10, 126
EaeI YGGCCR 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 18
FaiI YATR 1 cut(s) 143
Fnu4HI GCNGC 2 cut(s) 45, 76
Fsp4HI GCNGC 2 cut(s) 45, 76
GluI GCNGC 2 cut(s) 45, 76
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 100
HinfI GANTC 2 cut(s) 112, 149
HpaII CCGG 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 19, 130
HpyCH4V TGCA 2 cut(s) 44, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 10, 126
LpnPI CCDG 6 cut(s) 32, 41, 92, 101, 113, 180
Lsp1109I GCAGC 2 cut(s) 56, 62
LweI GCATC 1 cut(s) 200
MalI GATC 2 cut(s) 12, 128
MboI GATC 2 cut(s) 10, 126
MflI RGATCY 2 cut(s) 10, 126
MluCI AATT 3 cut(s) 54, 181, 203
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 2 cut(s) 10, 126
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 112, 149
PkrI GCNGC 2 cut(s) 46, 77
PshBI ATTAAT 1 cut(s) 39
PsuI RGATCY 2 cut(s) 10, 126
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 45, 76
Sau3AI GATC 2 cut(s) 10, 126
SetI ASST 4 cut(s) 49, 77, 120, 142
SfaNI GCATC 1 cut(s) 200
Sse9I AATT 3 cut(s) 54, 181, 203
TasI AATT 3 cut(s) 54, 181, 203
TfiI GAWTC 2 cut(s) 112, 149
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseI GCWGC 2 cut(s) 44, 75
TspDTI ATGAA 1 cut(s) 125
VspI ATTAAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.