Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0022576

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCCCAAACACAACCGCTCTCGATCTCTCTCTCTCTTGCCCAGTACCTCACCACTCTCTCTCTCGCCCAAAGTCCCAAACTGGAAATTTCTCAGCTCCGGAACCTCACTGTTCCCGCCGTTATGAACATTCCGATGGCCCAATCTTCTTCTCGCCGTCAGCTTACAGGTGAGCAAGTTGAAGTTGAGGGATATGGCATTGTTCTTATTAATACTGACGAGGCAGGTACCTTGATAGCCACCAATTTTCGGCTTCTTTTTCTGAGTGAGGGAACTAGAAATGTTATTCCGCTTGGCACAATACCTTTGGCAACAATTGAGAAGTTCAACAAAATGCATGTAGGACGGAAGGTGAGGGACAAATGGATTTATTGGTGGAATCTGAACCTGGGTTCTAGCAGTGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGTAAAACTCACAAGTAAAATGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGTTGGAAAGAGCTTTGAATAGAGGTGCTGCAGATGCTTACTCTTCTTCTCGTACGCCTCATGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004438 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0023052 GO:0030258 GO:0031410 GO:0031668 GO:0031982 GO:0033554 GO:0034593 GO:0035556 GO:0042221 GO:0042578 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052629 GO:0052744 GO:0052866 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0080134 GO:0097708 GO:0104004 GO:0106018 GO:1901700 GO:1901701 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Myotub-related

Protein Analysis

190

Amino Acids

21.26

Weight (kDa)

10.35

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022576)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c16g0499861 RchiOBHm_Chr4g0433221
rosa_roxburghii	Rroxscaffold_1G00070430
rosa_samantha	Rh6DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	19
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	3 cut(s)	17, 117, 290
AcsI	RAATTY	1 cut(s)	87
AfaI	GTAC	3 cut(s)	47, 229, 556
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	182, 328, 520
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	3 cut(s)	97, 163, 515
AluI	AGCT	3 cut(s)	97, 163, 515
Alw26I	GTCTC	1 cut(s)	491
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	87
AseI	ATTAAT	1 cut(s)	210
Asp718I	GGTACC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	43, 182, 364
BanI	GGYRCC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	104, 141
BciT130I	CCWGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	276, 396
BfmI	CTRYAG	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	104, 229
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	526
BmuI	ACTGGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	3 cut(s)	43, 87, 482
BseAI	TCCGGA	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	107, 254
BseNI	ACTGG	3 cut(s)	43, 87, 482
BseXI	GCAGC	1 cut(s)	517
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	100
BsiWI	CGTACG	1 cut(s)	554
BslFI	GGGAC	2 cut(s)	60, 371
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	2 cut(s)	60, 371
BsnI	GGCC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	3 cut(s)	17, 117, 290
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	106, 255
BspEI	TCCGGA	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	104, 229
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	43, 87, 482
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	112, 504
Bst6I	CTCTTC	2 cut(s)	463, 550
BstDEI	CTNAG	2 cut(s)	93, 263
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 536
BstNI	CCWGG	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	108, 406
BveI	ACCTGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	46, 228, 555
CviAII	CATG	3 cut(s)	338, 409, 563
CviJI	RGCY	6 cut(s)	97, 140, 163, 239, 253, 515
CviKI_1	RGCY	6 cut(s)	97, 140, 163, 239, 253, 515
CviQI	GTAC	3 cut(s)	46, 228, 555
DdeI	CTNAG	2 cut(s)	93, 263
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eam1104I	CTCTTC	2 cut(s)	463, 550
EarI	CTCTTC	2 cut(s)	463, 550
EcoRII	CCWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	339
FaeI	CATG	3 cut(s)	341, 412, 566
FaiI	YATR	5 cut(s)	125, 195, 339, 410, 564
FaqI	GGGAC	2 cut(s)	60, 371
FatI	CATG	3 cut(s)	337, 408, 562
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	531
Fsp4HI	GCNGC	1 cut(s)	531
FspBI	CTAG	2 cut(s)	276, 396
GluI	GCNGC	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	3 cut(s)	341, 412, 566
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	379, 471
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	3 cut(s)	43, 182, 364
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	135, 264, 384
Hpy188III	TCNNGA	2 cut(s)	22, 100
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	112, 504
HpyCH4V	TGCA	2 cut(s)	337, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 536
HpyF3I	CTNAG	2 cut(s)	93, 263
Hsp92II	CATG	3 cut(s)	341, 412, 566
Kpn2I	TCCGGA	1 cut(s)	99
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	8 cut(s)	56, 68, 113, 153, 210, 374, 401, 463
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	2 cut(s)	276, 396
MalI	GATC	1 cut(s)	26
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	1 cut(s)	24
MboII	GAAGA	5 cut(s)	138, 141, 480, 537, 540
MfeI	CAATTG	1 cut(s)	315
MluCI	AATT	3 cut(s)	87, 244, 315
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	8 cut(s)	59, 116, 181, 214, 262, 348, 518, 570
Mph1103I	ATGCAT	1 cut(s)	339
MroI	TCCGGA	1 cut(s)	99
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	389
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	419, 536
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	341, 412, 566
NlaIV	GGNNCC	2 cut(s)	104, 229
NsiI	ATGCAT	1 cut(s)	339
NspI	RCATGY	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	379
Pfl23II	CGTACG	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspLI	CGTACG	1 cut(s)	554
PspN4I	GGNNCC	2 cut(s)	104, 229
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	535
RsaI	GTAC	3 cut(s)	47, 229, 556
RsaNI	GTAC	3 cut(s)	46, 228, 555
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	87, 244, 315
SsiI	CCGC	3 cut(s)	17, 117, 290
SspMI	CTAG	2 cut(s)	276, 396
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	112, 504
TaqI	TCGA	1 cut(s)	23
TasI	AATT	3 cut(s)	87, 244, 315
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	115, 406
TseI	GCWGC	1 cut(s)	530
TspDTI	ATGAA	2 cut(s)	140, 446
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	115, 406
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	1 cut(s)	87
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	2 cut(s)	276, 396
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.