Rroxscaffold_1G00070430

Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
91343507 .. 91347913
4407 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00070430.1

Sequence Viewer

Length: 312 bp
ATGATAGAATGCTGCAATTCCTTTGGTTTCTCTACTGCTAGAGAGCTTAAACTGAAAATCAAGCCCAGTTATAACTATTTCGTTGCTACTCCACGCGCCGTTTCGCATTTGAAGTTGGATTGCTTGCTTGAAGGTGAGCAAGTTGAAGTTGAGGGATATGGCGTTGTTCTTATTAATACTGACGAGGCAGGTACCTTGATAGTCACCAATTTTCGGCTTCTTTTTCTGAGTGAGGGAACTAGAAATGTTATTCCGCTTGGCACAATACCTTTGGCAACAATTGAGAAGTTCAACAAAATGGAAGGAAGCTGA

Protein Analysis

103

Amino Acids

11.42

Weight (kDa)

5.36

Isoelectric Point (pI)

18.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022576)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c16g0499861 RchiOBHm_Chr4g0433221
rosa_roxburghii Rroxscaffold_1G00070430
rosa_samantha Rh6DG293500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 179
Acc65I GGTACC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 191
AccII CGCG 1 cut(s) 96
AciI CCGC 1 cut(s) 254
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 4 cut(s) 112, 131, 146, 292
AluBI AGCT 2 cut(s) 46, 309
AluI AGCT 2 cut(s) 46, 309
ApeKI GCWGC 1 cut(s) 12
AseI ATTAAT 1 cut(s) 174
Asp718I GGTACC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 146, 196
BanI GGYRCC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 83
BfaI CTAG 2 cut(s) 39, 240
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 193
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 213
BsmI GAATGC 1 cut(s) 14
BspACI CCGC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 219
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 98
BstUI CGCG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 192
CviJI RGCY 4 cut(s) 46, 64, 217, 309
CviKI_1 RGCY 4 cut(s) 46, 64, 217, 309
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 227
FaiI YATR 2 cut(s) 72, 159
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 2 cut(s) 39, 240
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 98
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HphI GGTGA 2 cut(s) 146, 196
Hpy188I TCNGA 1 cut(s) 228
HpyAV CCTTC 2 cut(s) 125, 296
HpyCH4V TGCA 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 227
HspAI GCGC 1 cut(s) 96
KpnI GGTACC 1 cut(s) 195
LpnPI CCDG 2 cut(s) 79, 174
MaeI CTAG 2 cut(s) 39, 240
MaeIII GTNAC 1 cut(s) 202
MfeI CAATTG 1 cut(s) 279
MluCI AATT 3 cut(s) 16, 208, 279
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 145, 178, 226
MseI TTAA 2 cut(s) 48, 174
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 14
MvnI CGCG 1 cut(s) 96
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 202
PctI GAATGC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 14
PshBI ATTAAT 1 cut(s) 174
PsiI TTATAA 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 193
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 48, 174
SatI GCNGC 1 cut(s) 13
SetI ASST 6 cut(s) 48, 136, 193, 197, 271, 311
Sse9I AATT 3 cut(s) 16, 208, 279
SsiI CCGC 1 cut(s) 254
SspMI CTAG 2 cut(s) 39, 240
TasI AATT 3 cut(s) 16, 208, 279
Tru1I TTAA 2 cut(s) 48, 174
Tru9I TTAA 2 cut(s) 48, 174
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 202
VspI ATTAAT 1 cut(s) 174
XspI CTAG 2 cut(s) 39, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.