RchiOBHm_Chr4g0433221

Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
57384547 .. 57387742
3196 bp
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UTR
Exon/CDS
Intron
PRQ40174

Sequence Viewer

Length: 342 bp
ATGCTTAAACTGAAAATCAAGCCCAGTTATAACTATTTCGTTGCTACTCCACGCGCCGTTTCGCATTTGAAGTTGGATTGCTTGCTTGAAGGTGAGCAAGTTGAAGTTGAGGGATATGGCATTGTTCTTATTAATACTGACGAGGCAGGTACCTTGATAGTCACCAATTTTCGGCTTCTTTTTCTGAGTGAGGGAACTAGAAATGTTATTCCGCTTGGCACAATACCTTTGGCAACAATTGAGAAGTTCAAAAAAATGCATGTAGGACGGAAGGTGAGGGACAAATGGATTTATTGGTGGAATCTGAACTTGGGTTCTAGCAGTGTATTGGTGATGTCCTAG

Protein Analysis

113

Amino Acids

12.84

Weight (kDa)

9.33

Isoelectric Point (pI)

14.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022576)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c16g0499861 RchiOBHm_Chr4g0433221
rosa_roxburghii Rroxscaffold_1G00070430
rosa_samantha Rh6DG293500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 149
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 212
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 4 cut(s) 70, 89, 104, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AseI ATTAAT 1 cut(s) 132
Asp718I GGTACC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 104, 154, 286
BanI GGYRCC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 41
BfaI CTAG 3 cut(s) 198, 318, 340
BfuAI ACCTGC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 293
BspACI CCGC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 263
BstUI CGCG 1 cut(s) 54
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 150
CviAII CATG 1 cut(s) 260
CviJI RGCY 2 cut(s) 22, 175
CviKI_1 RGCY 2 cut(s) 22, 175
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 261
FaeI CATG 1 cut(s) 263
FaiI YATR 3 cut(s) 30, 117, 261
FaqI GGGAC 1 cut(s) 293
FatI CATG 1 cut(s) 259
FspBI CTAG 3 cut(s) 198, 318, 340
GlaI GCGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 1 cut(s) 301
HphI GGTGA 3 cut(s) 104, 154, 286
Hpy188I TCNGA 2 cut(s) 186, 306
HpyAV CCTTC 2 cut(s) 83, 265
HpyCH4V TGCA 1 cut(s) 259
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 54
KpnI GGTACC 1 cut(s) 153
LpnPI CCDG 2 cut(s) 37, 132
MaeI CTAG 3 cut(s) 198, 318, 340
MaeIII GTNAC 1 cut(s) 160
MfeI CAATTG 1 cut(s) 237
MluCI AATT 2 cut(s) 166, 237
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 4 cut(s) 103, 136, 184, 270
Mph1103I ATGCAT 1 cut(s) 261
MseI TTAA 2 cut(s) 6, 132
MunI CAATTG 1 cut(s) 237
MvnI CGCG 1 cut(s) 54
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 261
NspI RCATGY 1 cut(s) 263
PfeI GAWTC 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 132
PsiI TTATAA 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 151
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 6, 132
SetI ASST 5 cut(s) 94, 151, 155, 229, 276
Sse9I AATT 2 cut(s) 166, 237
SsiI CCGC 1 cut(s) 212
SspMI CTAG 3 cut(s) 198, 318, 340
TasI AATT 2 cut(s) 166, 237
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 6, 132
Tru9I TTAA 2 cut(s) 6, 132
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 328
VspI ATTAAT 1 cut(s) 132
XceI RCATGY 1 cut(s) 263
XspI CTAG 3 cut(s) 198, 318, 340
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.