RchiOBHm_Chr1g0314071

Transmembrane protein 87B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029671
Physical Location & Seq
Forward (+)
1315651 .. 1316527
877 bp
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UTR
Exon/CDS
Intron
PRQ54475

Sequence Viewer

Length: 357 bp
ATGGCTAAGTTGGAGCTATATCGAAAATTTACCAACTCTCTCGCAGTGTCTGTGCTTCTGTCAGTGGCCTGGATTGGCTTTGAGCTATATTTCAATGCAACCGATCCATTGAGTGAGTTTTGGCAAATCGCCTGGGTTATTCCTGCATTTTGGACTGCTTGCCTACGCTCTCTTGGCAGTGATATGTGTCCTCTGGGCTCCATCAAATATGCATACTCAGAGGAGACAGGAGACGACTTTGATGAGGAGGGCGTCTCATTAACAAGTGGTGCTTTGAAGGTGAGCGGAGATACAGCAGCTATGCGAGAATTTAACAATGGGCTTGCAGAAGTTCTGGAGGAGGATAAGCGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

118

Amino Acids

13.15

Weight (kDa)

4.33

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 1 - 53 4.2e-16 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029671)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314071
rosa_samantha Rh1AG008400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 285
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 26, 308
AcyI GRCGYC 1 cut(s) 252
AgsI TTSAA 2 cut(s) 94, 277
AjnI CCWGG 2 cut(s) 68, 131
AluBI AGCT 3 cut(s) 16, 85, 299
AluI AGCT 3 cut(s) 16, 85, 299
Alw26I GTCTC 3 cut(s) 218, 225, 259
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 2 cut(s) 26, 308
AsuHPI GGTGA 1 cut(s) 292
BanII GRGCYC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 308
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 70, 133
BcoDI GTCTC 3 cut(s) 218, 225, 259
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 70, 133
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 70, 133
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 70, 133
BseDI CCNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 3 cut(s) 236, 260, 353
BseXI GCAGC 1 cut(s) 308
BshFI GGCC 1 cut(s) 68
BsmAI GTCTC 3 cut(s) 218, 225, 259
BsmBI CGTCTC 2 cut(s) 225, 259
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 70, 133
BstACI GRCGYC 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 160, 324
BstDEI CTNAG 2 cut(s) 6, 217
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 3 cut(s) 218, 225, 259
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 2 cut(s) 70, 133
BstSCI CCNGG 2 cut(s) 68, 131
BstV1I GCAGC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 68
BtsI GCAGTG 2 cut(s) 51, 184
BtsIMutI CAGTG 3 cut(s) 51, 69, 184
Cac8I GCNNGC 2 cut(s) 160, 324
CaiI CAGNNNCTG 1 cut(s) 50
CseI GACGC 1 cut(s) 241
CviJI RGCY 8 cut(s) 5, 16, 68, 78, 85, 198, 299, 322
CviKI_1 RGCY 8 cut(s) 5, 16, 68, 78, 85, 198, 299, 322
DdeI CTNAG 2 cut(s) 6, 217
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 68, 131
EcoT22I ATGCAT 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 200
Esp3I CGTCTC 2 cut(s) 225, 259
FaiI YATR 6 cut(s) 19, 88, 185, 210, 214, 302
FalI AAGNNNNNCTT 2 cut(s) 256, 288
Fnu4HI GCNGC 1 cut(s) 297
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 68
HgaI GACGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 252
HphI GGTGA 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 98, 146, 212, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 6, 217
Hsp92I GRCGYC 1 cut(s) 252
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 13, 203
LpnPI CCDG 8 cut(s) 55, 82, 118, 145, 156, 179, 213, 320
Lsp1109I GCAGC 1 cut(s) 308
MalI GATC 1 cut(s) 105
MbiI CCGCTC 1 cut(s) 285
MboI GATC 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 2 cut(s) 26, 308
MnlI CCTC 6 cut(s) 201, 214, 238, 241, 331, 334
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 2 cut(s) 260, 312
MspR9I CCNGG 2 cut(s) 70, 133
MvaI CCWGG 2 cut(s) 70, 133
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 214
PkrI GCNGC 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 68, 131
PspGI CCWGG 2 cut(s) 68, 131
PspN4I GGNNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 260, 312
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 70, 133
SduI GDGCHC 1 cut(s) 200
SetI ASST 4 cut(s) 18, 87, 282, 301
Sse9I AATT 2 cut(s) 26, 308
SsiI CCGC 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 68, 131
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 26, 308
Tru1I TTAA 2 cut(s) 260, 312
Tru9I TTAA 2 cut(s) 260, 312
TscAI CASTG 3 cut(s) 51, 69, 184
TseI GCWGC 1 cut(s) 296
TspRI CASTG 3 cut(s) 51, 69, 184
XapI RAATTY 2 cut(s) 26, 308
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.