Rh1AG008400

Transmembrane protein 87B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0029671
Physical Location & Seq
Forward (+)
1311520 .. 1314051
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG008400.1

Sequence Viewer

Length: 507 bp
ATGGGGGGATGGAAGTACAGGTTCTTGGCTTTGATGGGGCTTATAGTGTGCACAATTTCCTTCGGGTTAATAAGAAAAGTGCAGGAGATAGGGAAGAGTACCGCTTTCATGTCTATGTACAAGTTGGAGTCATCAGTTATATCAGGAGAAATGGCTAAGTTGGAGCTATATCGAAAATTTACCAACTCTCTCGCAGTGTCTGTGCTTCTGTCAGTGGCCTGGATTGGCTTTGAGCTATATTTCAATGCAACCGATCCATTGAGTGAGTTTTGGCAAATCGCCTGGGTTATTCCTGCATTTTGGACTGCTTGCCTACGCTCTCTTGGCAGTGATATGTGTCCTCTGGGCTCCATCAAATATGCATACTCAGAGGAGACAGGAGACGACTTTGATGAGGAGGGCGTCTCATTAACAAGTGGTGCTTTGAAGGTGAGCGGAGATACAGCAGCTATGCGAGAATTTAACAATGGGCTTGCAGAAGTTCTGGAGGAGGATAAGCGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

4.72

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 48 - 103 1.5e-16 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029671)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314071
rosa_samantha Rh1AG008400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 435
AciI CCGC 2 cut(s) 102, 435
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 2 cut(s) 176, 458
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 3 cut(s) 17, 100, 119
AgsI TTSAA 2 cut(s) 244, 427
AjnI CCWGG 2 cut(s) 218, 281
AluBI AGCT 3 cut(s) 166, 235, 449
AluI AGCT 3 cut(s) 166, 235, 449
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 3 cut(s) 368, 375, 409
Alw44I GTGCAC 1 cut(s) 49
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 1 cut(s) 216
ApaLI GTGCAC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 176, 458
AsuHPI GGTGA 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 458
BccI CCATC 3 cut(s) 3, 28, 359
BciT130I CCWGG 2 cut(s) 220, 283
BcoDI GTCTC 3 cut(s) 368, 375, 409
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 220, 283
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 220, 283
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpmI CTGGAG 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 282
BseBI CCWGG 2 cut(s) 220, 283
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 381
BseRI GAGGAG 3 cut(s) 386, 410, 503
BseSI GKGCMC 1 cut(s) 53
BseXI GCAGC 1 cut(s) 458
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 53
BsmAI GTCTC 3 cut(s) 368, 375, 409
BsmBI CGTCTC 2 cut(s) 375, 409
BsnI GGCC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 53, 350
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 2 cut(s) 102, 435
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 380
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 1 cut(s) 253
BssNI GRCGYC 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 220, 283
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 310, 474
BstDEI CTNAG 2 cut(s) 156, 367
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 3 cut(s) 368, 375, 409
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNI CCWGG 2 cut(s) 220, 283
BstSCI CCNGG 2 cut(s) 218, 281
BstSLI GKGCMC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 458
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 2 cut(s) 201, 334
BtsIMutI CAGTG 3 cut(s) 201, 219, 334
Cac8I GCNNGC 2 cut(s) 310, 474
CaiI CAGNNNCTG 1 cut(s) 200
CseI GACGC 1 cut(s) 391
Csp6I GTAC 3 cut(s) 16, 99, 118
CviAII CATG 1 cut(s) 109
CviQI GTAC 3 cut(s) 16, 99, 118
DdeI CTNAG 2 cut(s) 156, 367
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 218, 281
EcoT22I ATGCAT 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 350
Esp3I CGTCTC 2 cut(s) 375, 409
FaeI CATG 1 cut(s) 112
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 1 cut(s) 218
HgaI GACGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 128
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 2 cut(s) 144, 485
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 70, 421
HpyCH4V TGCA 6 cut(s) 51, 82, 248, 296, 362, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 2 cut(s) 156, 367
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 2 cut(s) 163, 353
Lsp1109I GCAGC 1 cut(s) 458
MalI GATC 1 cut(s) 255
MbiI CCGCTC 1 cut(s) 435
MboI GATC 1 cut(s) 253
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 53, 350
MluCI AATT 3 cut(s) 54, 176, 458
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 105, 141
MnlI CCTC 6 cut(s) 351, 364, 388, 391, 481, 484
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 3 cut(s) 68, 410, 462
MslI CAYNNNNRTG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 220, 283
MvaI CCWGG 2 cut(s) 220, 283
MwoI GCNNNNNNNGC 1 cut(s) 324
NdeII GATC 1 cut(s) 253
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 364
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 218, 281
PspGI CCWGG 2 cut(s) 218, 281
PspN4I GGNNCC 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 3 cut(s) 17, 100, 119
RsaNI GTAC 3 cut(s) 16, 99, 118
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 3 cut(s) 68, 410, 462
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 1 cut(s) 253
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 220, 283
SduI GDGCHC 2 cut(s) 53, 350
SetI ASST 5 cut(s) 23, 168, 237, 432, 451
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 3 cut(s) 54, 176, 458
SsiI CCGC 2 cut(s) 102, 435
StyD4I CCNGG 2 cut(s) 218, 281
TaqI TCGA 1 cut(s) 172
TasI AATT 3 cut(s) 54, 176, 458
TatI WGTACW 2 cut(s) 15, 117
Tru1I TTAA 3 cut(s) 68, 410, 462
Tru9I TTAA 3 cut(s) 68, 410, 462
TscAI CASTG 3 cut(s) 201, 219, 334
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 1 cut(s) 97
TspRI CASTG 3 cut(s) 201, 219, 334
VneI GTGCAC 1 cut(s) 49
XapI RAATTY 2 cut(s) 176, 458
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.