Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029596

Physical Location & Seq

Genomic Coordinates Reverse (-)

2612093 .. 2614788

Gene Structure 2696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54600

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGAGTCTGTTGAAGGCTACAGACTTTGGCCTGTCAGATTTTGTGAAACCAGATGAAAAGTTTATCAAAATTGTTGGTGGTACATACTGTGTAGCCCCCAAAGTGTTACATATGGCTTATGGTACAGAGGCTGTTGTCTGGAGCGTAGGTGTGATTGCACACATTCTATTGTGTGGCAGCTGTCCATTTTGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

65

Amino Acids

7.06

Weight (kDa)

6.69

Isoelectric Point (pI)

26.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 64	3.6e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029596)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315491 RchiOBHm_Chr2g0110331

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	82, 124
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	28, 191
ApeKI	GCWGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	2 cut(s)	30, 193
BsnI	GGCC	2 cut(s)	30, 193
BspANI	GGCC	2 cut(s)	30, 193
Bst4CI	ACNGT	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	30, 193
CaiI	CAGNNNCTG	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	81, 123
CviJI	RGCY	7 cut(s)	17, 30, 95, 116, 131, 180, 193
CviKI_1	RGCY	7 cut(s)	17, 30, 95, 116, 131, 180, 193
CviQI	GTAC	2 cut(s)	81, 123
FaiI	YATR	4 cut(s)	85, 111, 113, 120
FauNDI	CATATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	30, 193
HinfI	GANTC	1 cut(s)	4
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	3 cut(s)	44, 63, 124
Lsp1109I	GCAGC	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	105
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	2 cut(s)	82, 124
RsaNI	GTAC	2 cut(s)	81, 123
SatI	GCNGC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	13
SetI	ASST	2 cut(s)	151, 182
SfcI	CTRYAG	1 cut(s)	18
SgeI	CNNG	3 cut(s)	43, 62, 151
Sse9I	AATT	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	89
TasI	AATT	1 cut(s)	69
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.