Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029596

Physical Location & Seq

Genomic Coordinates Reverse (-)

21813982 .. 21815393

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48403

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAATGCATTGCTGGATCAACAACTTTTTAAGCTTAGTAAATCTAAGTCTGACCAACTTTATCTCTTATCTGTTCATCTATATATCATAGTTGCATTTTTTCCCCAGCTTCATCATGCACTCATCAAGTATGAAAAGTTTATCAAAATTGCTGGTAGTACATACTGTGTAGCCCCCAAAGTGTTACATATGGCTTATGGTACAGAGGCTGATGTCTGGAGCGTAGGTGTGATTGCACACATTCTATTGTGTGGCAGCTGTCCATTTTGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

91

Amino Acids

10.28

Weight (kDa)

8.48

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 90	2.7e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029596)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315491 RchiOBHm_Chr2g0110331

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	160, 202
AluBI	AGCT	3 cut(s)	34, 109, 258
AluI	AGCT	3 cut(s)	34, 109, 258
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bse3DI	GCAATG	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	267
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	8
BssMI	GATC	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	35, 45
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	159, 201
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	7 cut(s)	34, 109, 173, 194, 209, 258, 271
CviKI_1	RGCY	7 cut(s)	34, 109, 173, 194, 209, 258, 271
CviQI	GTAC	2 cut(s)	159, 201
DdeI	CTNAG	2 cut(s)	35, 45
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	1 cut(s)	119
FaiI	YATR	9 cut(s)	82, 84, 89, 117, 132, 163, 189, 191, 198
FatI	CATG	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	8, 95, 119, 236
HpyF3I	CTNAG	2 cut(s)	35, 45
Hsp92II	CATG	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	3 cut(s)	119, 138, 202
Lsp1109I	GCAGC	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	1 cut(s)	199
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	10
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	258
RsaI	GTAC	2 cut(s)	160, 202
RsaNI	GTAC	2 cut(s)	159, 201
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	1 cut(s)	16
SetI	ASST	4 cut(s)	36, 111, 229, 260
SgeI	CNNG	6 cut(s)	26, 118, 128, 139, 165, 229
Sse9I	AATT	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	167
TasI	AATT	1 cut(s)	147
TatI	WGTACW	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	17, 65, 101, 147
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.