Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029636

Physical Location & Seq

Genomic Coordinates Reverse (-)

6900673 .. 6902761

Gene Structure 2089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54950

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTGTTGATATCCAAGCTCCAACACAAAAATCTTGTAAGAATCATGGGTTTCTGTGTTAAAGTGGATGAGAAGTTACTGATTTATGAGTTCATGCCAAACAAAAGCTTGGACATTCTTCTATTCGATCCAATGAGAAGAACAGAGCTGGATTGGGCTAGCCGCTTCAATATCATTCAGGGTGTGGCTAGAGGGCTTCATTATCTTCATCATGATTCCTGTTTGAAGGTGATACATAGAGATCTGAAGTTCAGCAACATTCTCTTGGATGAGAAAATGAACCCAAAAATCTCAGACTTTGGATTGGCACGTATTGTTCATGGGACGAATAATCTTGAGAATACTGAGAAGGTTGTGGGAACACTTGGCTACATATCTCCGGAGTATGCCATGGGCGGGATATTTTCTGAAAACTCAGATGTGTACAGCTTTGGGGTCCTGGTATTGGAGATCATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

153

Amino Acids

17.55

Weight (kDa)

6.58

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 152	1.4e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 152	4.6e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029636)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0319251 RchiOBHm_Chr3g0485201

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	2 cut(s)	163, 396
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	396, 445
AgsI	TTSAA	2 cut(s)	169, 226
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	4 cut(s)	19, 108, 148, 429
AluI	AGCT	4 cut(s)	19, 108, 148, 429
AlwI	GGATC	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	379
AseI	ATTAAT	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	241
AsuNHI	GCTAGC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	440
BfaI	CTAG	2 cut(s)	159, 189
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	440
BmtI	GCTAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 445
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	73, 274
BseLI	CCNNNNNNNGG	2 cut(s)	396, 445
BseMII	CTCAG	3 cut(s)	306, 336, 429
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	396, 445
BsmFI	GGGAC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	127, 241, 450
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	2 cut(s)	163, 396
BspCNI	CTCAG	3 cut(s)	305, 337, 428
BspEI	TCCGGA	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	437
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	3 cut(s)	127, 241, 450
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	423
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	292, 345, 415
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	73, 274
BstKTI	GATC	3 cut(s)	130, 244, 453
BstMBI	GATC	3 cut(s)	127, 241, 450
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	73, 274
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	5 cut(s)	46, 94, 212, 320, 391
CviJI	RGCY	9 cut(s)	19, 108, 148, 158, 162, 188, 196, 369, 429
CviKI_1	RGCY	9 cut(s)	19, 108, 148, 158, 162, 188, 196, 369, 429
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	292, 345, 415
DpnI	GATC	3 cut(s)	129, 243, 452
DpnII	GATC	3 cut(s)	127, 241, 450
Eco130I	CCWWGG	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	438
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	5 cut(s)	49, 97, 215, 323, 394
FaiI	YATR	9 cut(s)	47, 87, 95, 213, 237, 321, 374, 387, 392
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	5 cut(s)	45, 93, 211, 319, 390
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	2 cut(s)	80, 281
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	159, 189
GluI	GCNGC	1 cut(s)	163
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	5 cut(s)	49, 97, 215, 323, 394
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	2 cut(s)	42, 215
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	4 cut(s)	246, 295, 409, 418
Hpy188III	TCNNGA	3 cut(s)	212, 335, 380
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	220, 343
HpyCH4IV	ACGT	1 cut(s)	310
HpyF3I	CTNAG	3 cut(s)	292, 345, 415
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	5 cut(s)	49, 97, 215, 323, 394
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	127, 241, 450
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	6 cut(s)	134, 164, 232, 393, 425, 452
MaeI	CTAG	2 cut(s)	159, 189
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	3 cut(s)	129, 243, 452
MboI	GATC	3 cut(s)	127, 241, 450
MboII	GAAGA	3 cut(s)	110, 150, 197
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	185
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	2 cut(s)	60, 456
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	127, 241, 450
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	5 cut(s)	49, 97, 215, 323, 394
NlaIV	GGNNCC	1 cut(s)	437
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	42, 215
PkrI	GCNGC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	311
PpuMI	RGGWCCY	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	436
PspPPI	RGGWCCY	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	60, 456
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	3 cut(s)	127, 241, 450
Sau96I	GGNCC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	440
SetI	ASST	7 cut(s)	21, 110, 150, 231, 313, 354, 431
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	457
SsiI	CCGC	2 cut(s)	163, 396
SspMI	CTAG	2 cut(s)	159, 189
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	390
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	457
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	42, 215
Tru1I	TTAA	2 cut(s)	60, 456
Tru9I	TTAA	2 cut(s)	60, 456
TspDTI	ATGAA	5 cut(s)	82, 188, 197, 293, 308
VpaK11BI	GGWCC	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	456
XspI	CTAG	2 cut(s)	159, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.