Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029636

Physical Location & Seq

Genomic Coordinates Forward (+)

31818499 .. 31819872

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTGTTGATCTCCAAGCTCCAACATAAAAATCTTGTAAGAATCATGGGTTTATGTGTTAAAGAGAATGAGAAATTACTGATTTATGAGTTCATGCCAAACAAAAGCTTGGACACTCTTCTATTTGTGCTGGATTGGGCTGGCCGCTTCAATATTCTTCAGGGTGTGGCTGAAGGGCTTTTTTATCTCCATCATGATTCCTGTTTGAAGGTAATACATAGAGATTTGAAGGCCAACAACATTCTCTTAGATGAGAAAATGAACCCAGAAATTTCAGATTTTGGATTAGCACGTATTGTTCATGGGACGGATCTAGAAAATACACAGAAGATTGTGGGAACACTAGGCTATATGTCTCCAGAGTATGCCATGGGAGGCATATTTTCAGCACAATCAGATGTCTACAGCTTTGGGGTCTTGGATGATGCTGCAAATAAGCCGACCATGCCGGAAGTTGCTTTCATGCTAAGCAGTGAGACAGATGCTCCACAACCTAAGCAAACCTATATTTGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

172

Amino Acids

19.34

Weight (kDa)

5.29

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 140	3e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 140	2.4e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029636)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0319251 RchiOBHm_Chr3g0485201

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	2 cut(s)	143, 192
AgsI	TTSAA	3 cut(s)	151, 208, 229
AluBI	AGCT	3 cut(s)	19, 108, 408
AluI	AGCT	3 cut(s)	19, 108, 408
Alw26I	GTCTC	2 cut(s)	360, 470
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	2 cut(s)	142, 231
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	360, 470
BfaI	CTAG	2 cut(s)	314, 344
BfmI	CTRYAG	1 cut(s)	403
BisI	GCNGC	2 cut(s)	145, 429
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	2 cut(s)	146, 430
BmsI	GCATC	2 cut(s)	415, 472
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	2 cut(s)	144, 233
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	360, 470
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	144, 233
Bsp143I	GATC	2 cut(s)	9, 310
Bsp1720I	GCTNAGC	1 cut(s)	467
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	2 cut(s)	144, 233
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	2 cut(s)	9, 310
BssT1I	CCWWGG	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	247, 467, 495
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	2 cut(s)	12, 313
BstMAI	GTCTC	2 cut(s)	360, 470
BstMBI	GATC	2 cut(s)	9, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	144, 233
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	193
CviAII	CATG	7 cut(s)	46, 94, 194, 302, 370, 445, 463
DdeI	CTNAG	3 cut(s)	247, 467, 495
DpnI	GATC	2 cut(s)	11, 312
DpnII	GATC	2 cut(s)	9, 310
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	143, 192
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	7 cut(s)	49, 97, 197, 305, 373, 448, 466
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	7 cut(s)	45, 93, 193, 301, 369, 444, 462
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	145, 429
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	2 cut(s)	145, 429
FspBI	CTAG	2 cut(s)	314, 344
GluI	GCNGC	2 cut(s)	145, 429
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	144, 233
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	7 cut(s)	49, 97, 197, 305, 373, 448, 466
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	2 cut(s)	42, 197
HpaII	CCGG	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	277, 397
Hpy188III	TCNNGA	3 cut(s)	194, 314, 359
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	3 cut(s)	167, 202, 223
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	3 cut(s)	247, 467, 495
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	7 cut(s)	49, 97, 197, 305, 373, 448, 466
Kzo9I	GATC	2 cut(s)	9, 310
LmnI	GCTCC	2 cut(s)	24, 490
LpnPI	CCDG	7 cut(s)	116, 126, 146, 214, 279, 372, 462
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	415, 472
MaeI	CTAG	2 cut(s)	314, 344
MaeII	ACGT	1 cut(s)	292
MalI	GATC	2 cut(s)	11, 312
MboI	GATC	2 cut(s)	9, 310
MboII	GAAGA	3 cut(s)	110, 149, 340
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	2 cut(s)	74, 270
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	60
MspI	CCGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	2 cut(s)	9, 310
NlaIII	CATG	7 cut(s)	49, 97, 197, 305, 373, 448, 466
PagI	TCATGA	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	42, 197
PkrI	GCNGC	2 cut(s)	146, 430
Ppu21I	YACGTR	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	145, 429
Sau3AI	GATC	2 cut(s)	9, 310
SetI	ASST	7 cut(s)	21, 110, 213, 295, 410, 496, 506
SfaNI	GCATC	2 cut(s)	415, 472
SfcI	CTRYAG	1 cut(s)	403
Sse9I	AATT	2 cut(s)	74, 270
SsiI	CCGC	1 cut(s)	145
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	314, 344
StyI	CCWWGG	1 cut(s)	369
TaiI	ACGT	1 cut(s)	295
TasI	AATT	2 cut(s)	74, 270
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	42, 197
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	4 cut(s)	82, 275, 290, 451
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	2 cut(s)	314, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.