Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022514

Physical Location & Seq

Genomic Coordinates Reverse (-)

6905549 .. 6907828

Gene Structure 2280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54954

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCCAACAGAAGCTTGGATACTTTTCTATTCGATCCAATGAGAAGAGCAGTGTTGGATTGGCCTTGCCGCTTCAATATTATTCAGGGCATAGCTAGAGGGCTTCTTTATCTCCATCACGATTCCTGTTTGGAAGTAATACATAGAGATCTGAAAATTAGCGACATTCTCTTGGATGAGAAAATGAAAGCAAAAATTTCAGATTTTGGATTGGCACGCATTGTTCAAGAGACACCAGATTTAGAAAATACTGAGAGGGTTGCATGGAGCTTATGGAATGAAGGCAGTGGATTGGCACTGGTTGATGAAGTATTAGGTGATTCATATTCCGCCACAGAAGTAATGAGATGTGTGCACATTGGGCTTCTTTGTGTACAGGACAATGCTGCAGATAGACCAACCATGGCAGATGTAGTTCTCATGCTAAGTAGTAACACAGATGGTCCCCAACCTAAGGAGCCTGTATTCACTATCCTGTATTCGCATGCCAGTATATCGTCCTCAACCAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

171

Amino Acids

19.17

Weight (kDa)

5.01

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 83	1.9e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	26 - 83	2.2e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022514)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G578400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319291 RchiOBHm_Chr5g0005621
rosa_wichuraiana	Rw1G003090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	70, 330
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	76, 227
AluBI	AGCT	3 cut(s)	15, 95, 270
AluI	AGCT	3 cut(s)	15, 95, 270
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	62
ApaLI	GTGCAC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	453
BaeGI	GKGCMC	1 cut(s)	357
BarI	GAAGNNNNNNTAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	123, 434
BciVI	GTATCC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	2 cut(s)	70, 387
BlsI	GCNGC	2 cut(s)	71, 388
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	2 cut(s)	445, 459
BsaJI	CCNNGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	2 cut(s)	303, 489
Bse21I	CCTNAGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	2 cut(s)	303, 489
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	34, 148
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	2 cut(s)	70, 330
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	445, 459
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	40
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	303, 489
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	2 cut(s)	34, 148
BssT1I	CCWWGG	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	217, 486
BstDEI	CTNAG	3 cut(s)	252, 425, 453
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	2 cut(s)	37, 151
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	34, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	2 cut(s)	57, 292
BtsIMutI	CAGTG	3 cut(s)	57, 292, 296
Cac8I	GCNNGC	2 cut(s)	217, 486
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	4 cut(s)	264, 403, 421, 485
CviJI	RGCY	7 cut(s)	15, 64, 95, 103, 270, 364, 460
CviKI_1	RGCY	7 cut(s)	15, 64, 95, 103, 270, 364, 460
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	3 cut(s)	252, 425, 453
DpnI	GATC	2 cut(s)	36, 150
DpnII	GATC	2 cut(s)	34, 148
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	443
Eco81I	CCTNAGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	4 cut(s)	267, 406, 424, 488
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	4 cut(s)	263, 402, 420, 484
Fnu4HI	GCNGC	2 cut(s)	70, 387
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	70, 387
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	70, 387
HaeIII	GGCC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	267, 406, 424, 488
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	2 cut(s)	122, 320
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	355, 374
Hpy188I	TCNGA	2 cut(s)	153, 202
Hpy188III	TCNNGA	2 cut(s)	119, 227
Hpy8I	GTNNAC	2 cut(s)	355, 374
HpyAV	CCTTC	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	263, 355, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	3 cut(s)	252, 425, 453
Hsp92II	CATG	4 cut(s)	267, 406, 424, 488
Kzo9I	GATC	2 cut(s)	34, 148
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	267, 457
LpnPI	CCDG	8 cut(s)	71, 139, 249, 284, 362, 474, 488, 502
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	2 cut(s)	36, 150
MboI	GATC	2 cut(s)	34, 148
MboII	GAAGA	1 cut(s)	57
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	2 cut(s)	156, 195
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	92, 249, 511
MwoI	GCNNNNNNNGC	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	34, 148
NlaIII	CATG	4 cut(s)	267, 406, 424, 488
NlaIV	GGNNCC	2 cut(s)	445, 459
NspI	RCATGY	1 cut(s)	488
PaeI	GCATGC	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	122, 320
PkrI	GCNGC	2 cut(s)	71, 388
PspN4I	GGNNCC	2 cut(s)	445, 459
PspPI	GGNCC	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	40
SatI	GCNGC	2 cut(s)	70, 387
Sau3AI	GATC	2 cut(s)	34, 148
Sau96I	GGNCC	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	5 cut(s)	17, 97, 272, 319, 454
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	443
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	2 cut(s)	156, 195
SsiI	CCGC	2 cut(s)	70, 330
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	402
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	156, 195
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	122, 320
TscAI	CASTG	3 cut(s)	57, 292, 303
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	4 cut(s)	200, 294, 312, 321
TspRI	CASTG	3 cut(s)	57, 292, 303
VneI	GTGCAC	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.