RchiOBHm_Chr5g0005621

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022514
Physical Location & Seq
Reverse (-)
3596888 .. 3598617
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28682

Sequence Viewer

Length: 588 bp
ATGGGTTGCTGTGTTAAAGGGGACGAGAAGTTACTGATTTATGAGTTCATGCCCAACAAAAGCTTGGATACTCTCCTATTCGATCCAATGAGGAGAGCAGCGTTGGATTGGCCTTGCCGCTTCAATATTATTCAGGGCGTTGCTAGAGGGCTTCTTTATCTCCATCACGATTCCTGTTTGAAAGTAATACATAGAGATCTGAAAGTTAGCAACATTCTCTTGGATGAGAAAATGAACGCAAAAATTTCAGATTTTGGATTGGCACGTATTGTTCAAGAGACGCCGGATTTAGAAAATACTCAGAGGGTTGTGGGAACTCTTGGTTATATGTCTCCGGAGTATGCCATGGGCGGGATATTTTCCTTGAAGTCAGATGTCTACAGCTATGGGGTCTTAGCACTGGAGATTATTAGTGGGAAGAAGAATACCAGCTTCTGTTTACATGATCAACAGCAAGGCTTTCTAGCCTATGCATGGAACTTATGGAATGAAGGCAGTGGATTGGCACTGGTTGATGAAGTATTGGGTGATTCATATTCCTCCTCAGAAGTAATGAGATGTGTGCACATTGGGCTTCTTTGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

195

Amino Acids

21.82

Weight (kDa)

5.5

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 142 1.1e-30 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 142 7.9e-29 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022514)

Species Orthologous Gene IDs
prunus_persica Prupe.1G578400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0319291 RchiOBHm_Chr5g0005621
rosa_wichuraiana Rw1G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 378
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 2 cut(s) 118, 351
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 351, 474
AgsI TTSAA 4 cut(s) 124, 181, 275, 367
AluBI AGCT 3 cut(s) 63, 384, 432
AluI AGCT 3 cut(s) 63, 384, 432
Alw21I GWGCWC 1 cut(s) 567
Alw26I GTCTC 2 cut(s) 272, 336
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 435
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 1 cut(s) 110
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 539
BaeGI GKGCMC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 171
BciVI GTATCC 1 cut(s) 61
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 272, 336
BfaI CTAG 2 cut(s) 144, 464
BfmI CTRYAG 1 cut(s) 379
BfuI GTATCC 1 cut(s) 61
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 99, 118
BlsI GCNGC 2 cut(s) 100, 119
BpmI CTGGAG 1 cut(s) 422
BsaAI YACGTR 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 474
Bse1I ACTGG 2 cut(s) 405, 513
BseAI TCCGGA 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 351, 474
BseMII CTCAG 2 cut(s) 314, 558
BseNI ACTGG 2 cut(s) 405, 513
BseRI GAGGAG 2 cut(s) 106, 532
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 567
BsiSI CCGG 2 cut(s) 284, 335
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 351, 474
BsmAI GTCTC 2 cut(s) 272, 336
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 567
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 82, 196, 445
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 2 cut(s) 118, 351
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 2 cut(s) 313, 557
BspEI TCCGGA 1 cut(s) 334
BspPI GGATC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 405, 513
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 3 cut(s) 82, 196, 445
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 300, 394, 544
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 3 cut(s) 85, 199, 448
BstMAI GTCTC 2 cut(s) 272, 336
BstMBI GATC 3 cut(s) 82, 196, 445
BstMWI GCNNNNNNNGC 1 cut(s) 571
BstSFI CTRYAG 1 cut(s) 379
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 3 cut(s) 398, 502, 506
CaiI CAGNNNCTG 1 cut(s) 435
CseI GACGC 1 cut(s) 289
CviAII CATG 4 cut(s) 49, 346, 443, 474
CviJI RGCY 8 cut(s) 63, 112, 151, 384, 432, 459, 467, 574
CviKI_1 RGCY 8 cut(s) 63, 112, 151, 384, 432, 459, 467, 574
DdeI CTNAG 3 cut(s) 300, 394, 544
DpnI GATC 3 cut(s) 84, 198, 447
DpnII GATC 3 cut(s) 82, 196, 445
Eco130I CCWWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 4 cut(s) 52, 349, 446, 477
FaqI GGGAC 1 cut(s) 35
FatI CATG 4 cut(s) 48, 345, 442, 473
FauI CCCGC 1 cut(s) 344
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 99, 118
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 2 cut(s) 99, 118
FspBI CTAG 2 cut(s) 144, 464
GluI GCNGC 2 cut(s) 99, 118
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 1 cut(s) 112
HapII CCGG 2 cut(s) 284, 335
HgaI GACGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 4 cut(s) 52, 349, 446, 477
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 2 cut(s) 170, 530
HpaII CCGG 2 cut(s) 284, 335
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 379, 440, 565
Hpy188I TCNGA 5 cut(s) 201, 250, 303, 373, 547
Hpy188III TCNNGA 3 cut(s) 167, 275, 335
Hpy8I GTNNAC 3 cut(s) 379, 440, 565
HpyAV CCTTC 1 cut(s) 485
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 473, 565, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 571
HpyF3I CTNAG 3 cut(s) 300, 394, 544
HpySE526I ACGT 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 4 cut(s) 52, 349, 446, 477
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 3 cut(s) 82, 196, 445
LpnPI CCDG 7 cut(s) 119, 187, 297, 348, 386, 442, 494
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 2 cut(s) 144, 464
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 30
MalI GATC 3 cut(s) 84, 198, 447
MboI GATC 3 cut(s) 82, 196, 445
MboII GAAGA 2 cut(s) 430, 433
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 567
MluCI AATT 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 5 cut(s) 84, 140, 297, 550, 553
Mph1103I ATGCAT 1 cut(s) 475
MroI TCCGGA 1 cut(s) 334
MseI TTAA 1 cut(s) 15
MspI CCGG 2 cut(s) 284, 335
MwoI GCNNNNNNNGC 1 cut(s) 571
NcoI CCATGG 1 cut(s) 345
NdeII GATC 3 cut(s) 82, 196, 445
NlaIII CATG 4 cut(s) 52, 349, 446, 477
NsiI ATGCAT 1 cut(s) 475
PfeI GAWTC 2 cut(s) 170, 530
PkrI GCNGC 2 cut(s) 100, 119
Ppu21I YACGTR 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 435
PsuI RGATCY 1 cut(s) 196
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 99, 118
Sau3AI GATC 3 cut(s) 82, 196, 445
SduI GDGCHC 1 cut(s) 567
SetI ASST 4 cut(s) 65, 268, 386, 434
SfcI CTRYAG 1 cut(s) 379
Sse9I AATT 1 cut(s) 243
SsiI CCGC 2 cut(s) 118, 351
SspI AATATT 1 cut(s) 127
SspMI CTAG 2 cut(s) 144, 464
StyI CCWWGG 1 cut(s) 345
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 243
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 2 cut(s) 170, 530
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 3 cut(s) 405, 502, 513
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 5 cut(s) 37, 248, 504, 522, 531
TspRI CASTG 3 cut(s) 405, 502, 513
VneI GTGCAC 1 cut(s) 563
XapI RAATTY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 2 cut(s) 144, 464
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.