RchiOBHm_Chr1g0319771

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024743
Physical Location & Seq
Reverse (-)
7435849 .. 7437627
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54999

Sequence Viewer

Length: 432 bp
ATGTTTGCAATTGAAGCACTGCTGTACGACGCGGAGGAGGAAAAGCAAAGCGTCTTCGTATTCTCCATTGCCGTAGCTGCCTTCGAGTCCGAACCTCTGGAGGGGCTGCCAAGGTGTTCGTTGCCACTGGAAGTGCCCTTATGTGATGAGTGGGACAATTGGGCGCGGAATCAGCTTATGGCTGCTGCCTCTGACTTGCTTGGAAAGGTCCATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTACATATGGAATTAGGAGCCTTTCATGGTGGCTCACTAGGGTCACCCTTCGCCATCAGCGCATTCTCGATGAGAGGTCTTCATCTTTGTTTGACCTTTTGCATGTCTTCACAAGAGAAACTTTGACAAGTTGGAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

143

Amino Acids

16.59

Weight (kDa)

5.37

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024743)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0319771 RchiOBHm_Chr1g0320611 RchiOBHm_Chr1g0320921

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 32, 166
AciI CCGC 2 cut(s) 32, 166
AfaI GTAC 2 cut(s) 26, 292
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 14, 275
AluBI AGCT 2 cut(s) 77, 175
AluI AGCT 2 cut(s) 77, 175
ApeKI GCWGC 4 cut(s) 77, 106, 182, 185
AspLEI GCGC 2 cut(s) 166, 351
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 325
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 138
BbsI GAAGAC 3 cut(s) 46, 360, 388
BbvI GCAGC 4 cut(s) 64, 93, 169, 172
BccI CCATC 1 cut(s) 351
BceAI ACGGC 1 cut(s) 56
BfaI CTAG 1 cut(s) 327
BisI GCNGC 4 cut(s) 78, 107, 183, 186
BlsI GCNGC 4 cut(s) 79, 108, 184, 187
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 308
BpiI GAAGAC 3 cut(s) 46, 360, 388
BpmI CTGGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 4 cut(s) 64, 93, 169, 172
Bsh1236I CGCG 2 cut(s) 32, 166
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 138
Bsp1407I TGTACA 1 cut(s) 290
BspACI CCGC 2 cut(s) 32, 166
BspFNI CGCG 2 cut(s) 32, 166
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 66
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 290
BstEII GGTNACC 1 cut(s) 331
BstFNI CGCG 2 cut(s) 32, 166
BstHHI GCGC 2 cut(s) 166, 351
BstMWI GCNNNNNNNGC 4 cut(s) 14, 77, 172, 348
BstNSI RCATGY 1 cut(s) 395
BstPI GGTNACC 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 2 cut(s) 32, 166
BstV1I GCAGC 4 cut(s) 64, 93, 169, 172
BstV2I GAAGAC 3 cut(s) 46, 360, 388
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 17, 125
CciI TCATGA 1 cut(s) 249
CfoI GCGC 2 cut(s) 166, 351
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 2 cut(s) 38, 40
Csp6I GTAC 2 cut(s) 25, 291
CviAII CATG 3 cut(s) 250, 315, 392
CviJI RGCY 6 cut(s) 77, 106, 175, 182, 309, 322
CviKI_1 RGCY 6 cut(s) 77, 106, 175, 182, 309, 322
CviQI GTAC 2 cut(s) 25, 291
Eco130I CCWWGG 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 208
Eco91I GGTNACC 1 cut(s) 331
EcoO65I GGTNACC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 3 cut(s) 253, 318, 395
FalI AAGNNNNNCTT 4 cut(s) 271, 303, 394, 426
FaqI GGGAC 1 cut(s) 167
FatI CATG 3 cut(s) 249, 314, 391
FauNDI CATATG 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 78, 107, 183, 186
Fsp4HI GCNGC 4 cut(s) 78, 107, 183, 186
FspBI CTAG 1 cut(s) 327
GlaI GCGC 2 cut(s) 165, 350
GluI GCNGC 4 cut(s) 78, 107, 183, 186
GsuI CTGGAG 1 cut(s) 119
HgaI GACGC 2 cut(s) 38, 40
HhaI GCGC 2 cut(s) 166, 351
Hin1II CATG 3 cut(s) 253, 318, 395
Hin6I GCGC 2 cut(s) 164, 349
HinP1I GCGC 2 cut(s) 164, 349
HinfI GANTC 2 cut(s) 86, 169
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 91, 193
Hpy188III TCNNGA 3 cut(s) 98, 250, 356
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 91, 269, 347
HpyCH4V TGCA 3 cut(s) 8, 236, 391
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 77, 172, 348
Hsp92II CATG 3 cut(s) 253, 318, 395
HspAI GCGC 2 cut(s) 164, 349
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 2 cut(s) 83, 113
Lsp1109I GCAGC 4 cut(s) 64, 93, 169, 172
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 331
MboII GAAGA 4 cut(s) 46, 265, 360, 388
MfeI CAATTG 2 cut(s) 9, 157
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 4 cut(s) 9, 157, 228, 300
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 6 cut(s) 28, 31, 94, 105, 199, 357
MslI CAYNNNNRTG 1 cut(s) 254
MunI CAATTG 2 cut(s) 9, 157
Mva1269I GAATGC 1 cut(s) 351
MvnI CGCG 2 cut(s) 32, 166
MwoI GCNNNNNNNGC 4 cut(s) 14, 77, 172, 348
NdeI CATATG 1 cut(s) 295
NlaIII CATG 3 cut(s) 253, 318, 395
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 395
PagI TCATGA 1 cut(s) 249
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 4 cut(s) 79, 108, 184, 187
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 208
RsaI GTAC 2 cut(s) 26, 292
RsaNI GTAC 2 cut(s) 25, 291
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 4 cut(s) 78, 107, 183, 186
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 95
SduI GDGCHC 1 cut(s) 138
SetI ASST 7 cut(s) 79, 97, 116, 177, 210, 368, 387
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 4 cut(s) 9, 157, 228, 300
SsiI CCGC 2 cut(s) 32, 166
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 110
TaqI TCGA 2 cut(s) 84, 357
TasI AATT 4 cut(s) 9, 157, 228, 300
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 1 cut(s) 169
TscAI CASTG 2 cut(s) 24, 132
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 77, 106, 182, 185
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 266, 272, 303, 360
TspRI CASTG 2 cut(s) 24, 132
VpaK11BI GGWCC 1 cut(s) 208
XceI RCATGY 1 cut(s) 395
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.