RchiOBHm_Chr1g0320611

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024743
Physical Location & Seq
Reverse (-)
8260046 .. 8261191
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55075

Sequence Viewer

Length: 360 bp
ATGGGAAGGACCAGGCCTATAGAGTCGTCACCTTTGGGTCTGCCAAGGTGTCCGTTGCCACTGGAAGTGCCCTTATGTGATGAACGGAACAATTGGGCGCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTGTTGGTTAGCTTTTACCGTGTGGATCATCTGGAAAGTTAGATGGGATTTTGACTTGGAGACTTTGTATCGTGCTGTTTCGGGGAAAGCTTGTGTCACTATTTGTGAAAGCTACCCTCTTATCAAAGGGATTAATGCTAGTCAGCAGCATATTCAGCTGTTCAGATTGGCTTGCCAAGCAACCCAAAATGAGGATGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

119

Amino Acids

13.55

Weight (kDa)

7.57

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024743)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0319771 RchiOBHm_Chr1g0320611 RchiOBHm_Chr1g0320921

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 100
AclWI GGATC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 346
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 5 cut(s) 109, 167, 245, 267, 313
AluI AGCT 5 cut(s) 109, 167, 245, 267, 313
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 188
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 116, 301
AseI ATTAAT 1 cut(s) 288
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 21
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 103, 313
BccI CCATC 2 cut(s) 192, 344
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 117, 302
BlsI GCNGC 2 cut(s) 118, 303
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 2 cut(s) 103, 313
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 100
BspANI GGCC 1 cut(s) 16
BspFNI CGCG 1 cut(s) 100
BspPI GGATC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 121, 328
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 3 cut(s) 106, 310, 332
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 72
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 103, 313
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 59, 161
Cac8I GCNNGC 2 cut(s) 121, 328
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 9
CviJI RGCY 9 cut(s) 16, 109, 116, 123, 167, 245, 267, 313, 326
CviKI_1 RGCY 9 cut(s) 16, 109, 116, 123, 167, 245, 267, 313, 326
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaiI YATR 5 cut(s) 20, 76, 113, 147, 306
Fnu4HI GCNGC 2 cut(s) 117, 302
Fsp4HI GCNGC 2 cut(s) 117, 302
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 99
GluI GCNGC 2 cut(s) 117, 302
HaeIII GGCC 1 cut(s) 16
HhaI GCGC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 2 cut(s) 23, 103
HphI GGTGA 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 127, 320
Hpy188III TCNNGA 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 310, 332
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 4 cut(s) 25, 47, 105, 172
Lsp1109I GCAGC 2 cut(s) 103, 313
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 27, 250
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MfeI CAATTG 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 91
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 2 cut(s) 282, 340
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 3 cut(s) 106, 310, 332
NdeII GATC 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 27, 250
PceI AGGCCT 1 cut(s) 16
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 118, 303
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspPI GGNCC 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 313
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 117, 302
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 72
SetI ASST 8 cut(s) 34, 50, 111, 144, 169, 247, 269, 315
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 9
Sse9I AATT 1 cut(s) 91
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 1 cut(s) 100
SspI AATATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 294
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 175
TasI AATT 1 cut(s) 91
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 66, 161
TseFI GTSAC 2 cut(s) 27, 250
TseI GCWGC 2 cut(s) 116, 301
Tsp45I GTSAC 2 cut(s) 27, 250
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 2 cut(s) 42, 100
TspRI CASTG 2 cut(s) 66, 161
VpaK11BI GGWCC 1 cut(s) 9
VspI ATTAAT 1 cut(s) 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.