RchiOBHm_Chr1g0321821

GTP-BINDING protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029666
Physical Location & Seq
Forward (+)
9353311 .. 9354338
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55185

Sequence Viewer

Length: 474 bp
ATGCTGCGAACCATCTCTATCTCCCGGACTCCTCTGAGGTCCCTCTTCCAAAACCGAGCTCATCATTGTTCAATCCCAAACCAAACCGCATTACCACCGTCCGCCTCTTCCAGTTTGATCTCCTATTCTCTTTACTCGACGTCAGCAAAGCAAGAGAAGGAGGACAGAAATGAGGTTGTTTCGCTTTTCAACAGAGATCCAGCTGCCCCTCCGAGGCTCTTTGTGGTCCAGCCCCGGCTTCGTCCCGATTCTATCTTGCACGCTAAGCTCAACGAAGCTCTCAGCCTCGCCAACTCTCTTGAAGAACAGCGAAATGGTTGCTTCGAAAACAATTTGTGCGATAAGGAAACACCACCGCACGTTGTTGTTCAAAACCCAATAGTGAGGCACCAAACTCGTGCAGGATCAAGTGGATGCTGTTTTTGTGAATACAACTTTGTCTGGAATTCAGCAGAGGAACTTGGAGGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043021 GO:0043022 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

157

Amino Acids

17.55

Weight (kDa)

8.26

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029666)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0321821 RchiOBHm_Chr2g0109051

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 387
AciI CCGC 3 cut(s) 87, 102, 356
AclWI GGATC 2 cut(s) 191, 412
AcsI RAATTY 1 cut(s) 445
AcyI GRCGYC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 4 cut(s) 72, 190, 302, 371
AluBI AGCT 4 cut(s) 59, 203, 268, 278
AluI AGCT 4 cut(s) 59, 203, 268, 278
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 2 cut(s) 191, 412
ApeKI GCWGC 2 cut(s) 4, 203
ApoI RAATTY 1 cut(s) 445
AspS9I GGNCC 2 cut(s) 39, 226
AsuC2I CCSGG 2 cut(s) 25, 235
AsuII TTCGAA 1 cut(s) 324
AvaII GGWCC 2 cut(s) 39, 226
BanI GGYRCC 1 cut(s) 387
BanII GRGCYC 1 cut(s) 61
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 20
BcgI CGANNNNNNTGC 4 cut(s) 300, 334, 377, 411
BcnI CCSGG 2 cut(s) 25, 235
BisI GCNGC 2 cut(s) 5, 204
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 2 cut(s) 6, 205
Bme1390I CCNGG 2 cut(s) 25, 235
Bme18I GGWCC 2 cut(s) 39, 226
BmgT120I GGNCC 2 cut(s) 39, 226
BmiI GGNNCC 2 cut(s) 41, 389
BmrFI CCNGG 2 cut(s) 25, 235
BmsI GCATC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 324
BpuMI CCSGG 2 cut(s) 25, 235
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 212, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 212, 233
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 26, 295
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 2 cut(s) 25, 235
BslFI GGGAC 2 cut(s) 25, 228
BslI CCNNNNNNNGG 1 cut(s) 213
BsmFI GGGAC 2 cut(s) 25, 228
Bsp119I TTCGAA 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 3 cut(s) 117, 196, 404
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 3 cut(s) 87, 102, 356
BspCNI CTCAG 2 cut(s) 27, 294
BspLI GGNNCC 2 cut(s) 41, 389
BspPI GGATC 2 cut(s) 191, 412
BspT104I TTCGAA 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 387
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 212, 233
BssMI GATC 3 cut(s) 117, 196, 404
BssNI GRCGYC 1 cut(s) 140
BssSI CACGAG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 2 cut(s) 50, 112
BstACI GRCGYC 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 35, 264, 281
BstF5I GGATG 1 cut(s) 419
BstKTI GATC 3 cut(s) 120, 199, 407
BstMBI GATC 3 cut(s) 117, 196, 404
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 23, 233
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 39, 226
CviJI RGCY 8 cut(s) 59, 203, 217, 232, 238, 268, 278, 285
CviKI_1 RGCY 8 cut(s) 59, 203, 217, 232, 238, 268, 278, 285
DdeI CTNAG 3 cut(s) 35, 264, 281
DpnI GATC 3 cut(s) 119, 198, 406
DpnII GATC 3 cut(s) 117, 196, 404
Eam1104I CTCTTC 2 cut(s) 50, 112
EarI CTCTTC 2 cut(s) 50, 112
EciI GGCGGA 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco47I GGWCC 2 cut(s) 39, 226
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 61
FaqI GGGAC 2 cut(s) 25, 228
Fnu4HI GCNGC 2 cut(s) 5, 204
FokI GGATG 1 cut(s) 426
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 5, 204
GluI GCNGC 2 cut(s) 5, 204
HapII CCGG 2 cut(s) 25, 235
Hin1I GRCGYC 1 cut(s) 140
HinfI GANTC 2 cut(s) 28, 248
HpaII CCGG 2 cut(s) 25, 235
Hpy188I TCNGA 2 cut(s) 36, 213
Hpy188III TCNNGA 3 cut(s) 245, 299, 442
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4IV ACGT 2 cut(s) 140, 360
HpyCH4V TGCA 2 cut(s) 259, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 3 cut(s) 35, 264, 281
HpySE526I ACGT 2 cut(s) 140, 360
Hsp92I GRCGYC 1 cut(s) 140
Kzo9I GATC 3 cut(s) 117, 196, 404
LpnPI CCDG 7 cut(s) 38, 124, 213, 242, 248, 387, 427
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 404
MaeII ACGT 2 cut(s) 140, 360
MalI GATC 3 cut(s) 119, 198, 406
MboI GATC 3 cut(s) 117, 196, 404
MboII GAAGA 3 cut(s) 37, 99, 314
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 2 cut(s) 331, 445
MlyI GAGTC 1 cut(s) 22
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 25, 235
MspR9I CCNGG 2 cut(s) 25, 235
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 2 cut(s) 25, 235
NdeII GATC 3 cut(s) 117, 196, 404
NlaIV GGNNCC 2 cut(s) 41, 389
NspV TTCGAA 1 cut(s) 324
PfeI GAWTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 2 cut(s) 6, 205
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 41, 389
PspPI GGNCC 2 cut(s) 39, 226
PspPPI RGGWCCY 1 cut(s) 39
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 61
SatI GCNGC 2 cut(s) 5, 204
Sau3AI GATC 3 cut(s) 117, 196, 404
Sau96I GGNCC 2 cut(s) 39, 226
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 25, 235
SduI GDGCHC 1 cut(s) 61
SetI ASST 8 cut(s) 41, 61, 143, 177, 205, 270, 280, 363
SfaNI GCATC 1 cut(s) 404
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 2 cut(s) 39, 226
Sse9I AATT 2 cut(s) 331, 445
SsiI CCGC 3 cut(s) 87, 102, 356
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 23, 233
TaaI ACNGT 1 cut(s) 99
TaiI ACGT 2 cut(s) 143, 363
TaqI TCGA 2 cut(s) 137, 324
TasI AATT 2 cut(s) 331, 445
TfiI GAWTC 1 cut(s) 248
TseI GCWGC 2 cut(s) 4, 203
VpaK11BI GGWCC 2 cut(s) 39, 226
XapI RAATTY 1 cut(s) 445
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.