RchiOBHm_Chr2g0109051

GTP-BINDING protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029666
Physical Location & Seq
Forward (+)
20458090 .. 20461803
3714 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48290

Sequence Viewer

Length: 483 bp
ATGCTGAGAACCATTTCTATCTCCTGGACTCCTCTGAGGTCCCTCTTCCAAAATCGAGCTCCTCATTGTTCAATCCCAAACCAAACCCCATCACCACCATGTACCTCTTCCAGTTTGATCTCCTATTCTCTTTACTCGACGTCATCAAAGCAAGAGAAGGAGGACAGAAATGAGGTCGTTTCGCTTTTCAACAGAGATCCAGCTGCCCCTCCAAGGCTCTTTGTGGTCCAGCCCCGGCTTCGTCCCGATTCTATCTTGCACGCTAAGCTCAACGAAGCTCTCAGCCTTGCTAACTCTCTTGAAGAACAGCGAAATGGATGCTTCGAAAACAATTTGTGTGATAAGGAAACACCACCGCACGTTGTTGTTCAAAACCCAATAGTGAGGCACCAAACTCGTGCAGATACATATTTTGGAAAAGGAACTTTGGAAGCTGTTAAGTGTTATCTGAATGCTGCGGAAGAAAAGGAAAGACATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043021 GO:0043022 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

160

Amino Acids

18.13

Weight (kDa)

8.31

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029666)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0321821 RchiOBHm_Chr2g0109051

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 387
AciI CCGC 2 cut(s) 356, 458
AclWI GGATC 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 4 cut(s) 72, 190, 302, 371
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 5 cut(s) 59, 203, 268, 278, 434
AluI AGCT 5 cut(s) 59, 203, 268, 278, 434
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 203, 455
Asp700I GAANNNNTTC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 39, 226
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 84
AsuII TTCGAA 1 cut(s) 324
AvaII GGWCC 2 cut(s) 39, 226
BanI GGYRCC 1 cut(s) 387
BanII GRGCYC 1 cut(s) 61
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 190, 442
BccI CCATC 1 cut(s) 97
BcgI CGANNNNNNTGC 4 cut(s) 300, 334, 377, 411
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 1 cut(s) 235
BisI GCNGC 2 cut(s) 204, 456
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 2 cut(s) 205, 457
Bme1390I CCNGG 2 cut(s) 25, 235
Bme18I GGWCC 2 cut(s) 39, 226
BmgT120I GGNCC 2 cut(s) 39, 226
BmiI GGNNCC 2 cut(s) 41, 389
BmrFI CCNGG 2 cut(s) 25, 235
BmsI GCATC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 212, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 212, 233
BseGI GGATG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 26, 295
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 2 cut(s) 21, 51
BseXI GCAGC 2 cut(s) 190, 442
BsgI GTGCAG 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 2 cut(s) 25, 228
BslI CCNNNNNNNGG 1 cut(s) 213
BsmFI GGGAC 2 cut(s) 25, 228
BsmI GAATGC 1 cut(s) 457
Bsp119I TTCGAA 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 117, 196
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 2 cut(s) 356, 458
BspCNI CTCAG 2 cut(s) 27, 294
BspLI GGNNCC 2 cut(s) 41, 389
BspPI GGATC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 387
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 212, 233
BssMI GATC 2 cut(s) 117, 196
BssNI GRCGYC 1 cut(s) 140
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 25
Bst6I CTCTTC 2 cut(s) 50, 112
BstACI GRCGYC 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 5, 35, 264, 281
BstF5I GGATG 1 cut(s) 323
BstKTI GATC 2 cut(s) 120, 199
BstMBI GATC 2 cut(s) 117, 196
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 23, 233
BstV1I GCAGC 2 cut(s) 190, 442
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 39, 226
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 99
CviJI RGCY 9 cut(s) 59, 203, 217, 232, 238, 268, 278, 285, 434
CviKI_1 RGCY 9 cut(s) 59, 203, 217, 232, 238, 268, 278, 285, 434
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 4 cut(s) 5, 35, 264, 281
DpnI GATC 2 cut(s) 119, 198
DpnII GATC 2 cut(s) 117, 196
Eam1104I CTCTTC 2 cut(s) 50, 112
EarI CTCTTC 2 cut(s) 50, 112
Ecl136II GAGCTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 61
Eco47I GGWCC 2 cut(s) 39, 226
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 1 cut(s) 102
FaiI YATR 2 cut(s) 100, 409
FaqI GGGAC 2 cut(s) 25, 228
FatI CATG 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 204, 456
FokI GGATG 1 cut(s) 330
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 204, 456
GluI GCNGC 2 cut(s) 204, 456
HapII CCGG 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 1 cut(s) 102
HinfI GANTC 2 cut(s) 28, 248
HpaII CCGG 1 cut(s) 235
HphI GGTGA 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 36, 450
Hpy188III TCNNGA 2 cut(s) 245, 299
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 2 cut(s) 140, 360
HpyCH4V TGCA 2 cut(s) 259, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 4 cut(s) 5, 35, 264, 281
HpySE526I ACGT 2 cut(s) 140, 360
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 102
Kzo9I GATC 2 cut(s) 117, 196
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 6 cut(s) 10, 37, 124, 213, 242, 248
Lsp1109I GCAGC 2 cut(s) 190, 442
LweI GCATC 1 cut(s) 308
MaeII ACGT 2 cut(s) 140, 360
MalI GATC 2 cut(s) 119, 198
MboI GATC 2 cut(s) 117, 196
MboII GAAGA 4 cut(s) 37, 99, 314, 473
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 9 cut(s) 30, 42, 53, 72, 115, 154, 166, 219, 378
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 2 cut(s) 438, 481
MslI CAYNNNNRTG 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 25, 235
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 235
NdeII GATC 2 cut(s) 117, 196
NlaIII CATG 1 cut(s) 102
NlaIV GGNNCC 2 cut(s) 41, 389
NspV TTCGAA 1 cut(s) 324
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 2 cut(s) 205, 457
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 41, 389
PspPI GGNCC 2 cut(s) 39, 226
PspPPI RGGWCCY 1 cut(s) 39
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 97
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 438, 481
SatI GCNGC 2 cut(s) 204, 456
Sau3AI GATC 2 cut(s) 117, 196
Sau96I GGNCC 2 cut(s) 39, 226
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 25, 235
SduI GDGCHC 1 cut(s) 61
SfaNI GCATC 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 2 cut(s) 39, 226
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 1 cut(s) 331
SsiI CCGC 2 cut(s) 356, 458
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 23, 233
StyI CCWWGG 1 cut(s) 212
TaiI ACGT 2 cut(s) 143, 363
TaqI TCGA 3 cut(s) 55, 137, 324
TasI AATT 1 cut(s) 331
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 438, 481
Tru9I TTAA 2 cut(s) 438, 481
TseI GCWGC 2 cut(s) 203, 455
VpaK11BI GGWCC 2 cut(s) 39, 226
XmnI GAANNNNTTC 1 cut(s) 13
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.