divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0328691 |
| rosa_roxburghii | Rroxscaffold_4G00321440 |
| rosa_samantha | Rh5DG251900 Rh5DG562900 Rh6CG478200 Rh7BG307400 Rh7DG038900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 429 |
| AclWI | GGATC | 1 cut(s) | 284 |
| AcoI | YGGCCR | 1 cut(s) | 694 |
| AcsI | RAATTY | 1 cut(s) | 328 |
| AcuI | CTGAAG | 1 cut(s) | 659 |
| AflIII | ACRYGT | 1 cut(s) | 641 |
| AgsI | TTSAA | 2 cut(s) | 55, 639 |
| AjnI | CCWGG | 1 cut(s) | 376 |
| AluBI | AGCT | 3 cut(s) | 339, 489, 587 |
| AluI | AGCT | 3 cut(s) | 339, 489, 587 |
| AlwI | GGATC | 1 cut(s) | 284 |
| AoxI | GGCC | 2 cut(s) | 232, 694 |
| ApoI | RAATTY | 1 cut(s) | 328 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 4 cut(s) | 139, 178, 387, 658 |
| BalI | TGGCCA | 1 cut(s) | 696 |
| BccI | CCATC | 1 cut(s) | 106 |
| BciT130I | CCWGG | 1 cut(s) | 378 |
| BfaI | CTAG | 3 cut(s) | 294, 390, 438 |
| BfmI | CTRYAG | 2 cut(s) | 153, 704 |
| Bme1390I | CCNGG | 1 cut(s) | 378 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmrFI | CCNGG | 1 cut(s) | 378 |
| BmsI | GCATC | 1 cut(s) | 422 |
| BpuEI | CTTGAG | 1 cut(s) | 505 |
| BseBI | CCWGG | 1 cut(s) | 378 |
| BseGI | GGATG | 2 cut(s) | 255, 437 |
| BseMII | CTCAG | 1 cut(s) | 459 |
| BseRI | GAGGAG | 1 cut(s) | 181 |
| BsgI | GTGCAG | 1 cut(s) | 306 |
| BshFI | GGCC | 2 cut(s) | 234, 696 |
| BsmI | GAATGC | 1 cut(s) | 554 |
| BsnI | GGCC | 2 cut(s) | 234, 696 |
| Bsp143I | GATC | 1 cut(s) | 289 |
| BspACI | CCGC | 1 cut(s) | 429 |
| BspANI | GGCC | 2 cut(s) | 234, 696 |
| BspCNI | CTCAG | 1 cut(s) | 460 |
| BspHI | TCATGA | 1 cut(s) | 7 |
| BspPI | GGATC | 1 cut(s) | 284 |
| BssMI | GATC | 1 cut(s) | 289 |
| Bst2UI | CCWGG | 1 cut(s) | 378 |
| Bst4CI | ACNGT | 2 cut(s) | 575, 692 |
| Bst6I | CTCTTC | 2 cut(s) | 68, 594 |
| BstDEI | CTNAG | 1 cut(s) | 468 |
| BstF5I | GGATG | 2 cut(s) | 255, 437 |
| BstKTI | GATC | 1 cut(s) | 292 |
| BstMBI | GATC | 1 cut(s) | 289 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 345 |
| BstNI | CCWGG | 1 cut(s) | 378 |
| BstNSI | RCATGY | 2 cut(s) | 324, 645 |
| BstSCI | CCNGG | 1 cut(s) | 376 |
| BstSFI | CTRYAG | 2 cut(s) | 153, 704 |
| BstX2I | RGATCY | 1 cut(s) | 289 |
| BstYI | RGATCY | 1 cut(s) | 289 |
| BsuRI | GGCC | 2 cut(s) | 234, 696 |
| BtsCI | GGATG | 2 cut(s) | 255, 437 |
| CciI | TCATGA | 1 cut(s) | 7 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| CviAII | CATG | 4 cut(s) | 8, 321, 413, 642 |
| CviJI | RGCY | 8 cut(s) | 116, 214, 234, 339, 388, 489, 587, 696 |
| CviKI_1 | RGCY | 8 cut(s) | 116, 214, 234, 339, 388, 489, 587, 696 |
| DdeI | CTNAG | 1 cut(s) | 468 |
| DpnI | GATC | 1 cut(s) | 291 |
| DpnII | GATC | 1 cut(s) | 289 |
| EaeI | YGGCCR | 1 cut(s) | 694 |
| Eam1104I | CTCTTC | 2 cut(s) | 68, 594 |
| EarI | CTCTTC | 2 cut(s) | 68, 594 |
| EciI | GGCGGA | 1 cut(s) | 444 |
| Eco57I | CTGAAG | 1 cut(s) | 659 |
| EcoRII | CCWGG | 1 cut(s) | 376 |
| EcoT22I | ATGCAT | 1 cut(s) | 322 |
| FaeI | CATG | 4 cut(s) | 11, 324, 416, 645 |
| FatI | CATG | 4 cut(s) | 7, 320, 412, 641 |
| FokI | GGATG | 2 cut(s) | 262, 444 |
| FspBI | CTAG | 3 cut(s) | 294, 390, 438 |
| HaeIII | GGCC | 2 cut(s) | 234, 696 |
| Hin1II | CATG | 4 cut(s) | 11, 324, 416, 645 |
| HincII | GTYRAC | 1 cut(s) | 447 |
| HindII | GTYRAC | 1 cut(s) | 447 |
| HindIII | AAGCTT | 1 cut(s) | 585 |
| HinfI | GANTC | 6 cut(s) | 4, 170, 238, 409, 518, 700 |
| HphI | GGTGA | 4 cut(s) | 139, 178, 387, 658 |
| Hpy166II | GTNNAC | 4 cut(s) | 47, 163, 395, 447 |
| Hpy188I | TCNGA | 4 cut(s) | 65, 106, 249, 727 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 484, 677 |
| Hpy8I | GTNNAC | 4 cut(s) | 47, 163, 395, 447 |
| HpyAV | CCTTC | 1 cut(s) | 259 |
| HpyCH4III | ACNGT | 2 cut(s) | 575, 692 |
| HpyCH4V | TGCA | 6 cut(s) | 122, 287, 320, 366, 435, 552 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 345 |
| HpyF3I | CTNAG | 1 cut(s) | 468 |
| Hsp92II | CATG | 4 cut(s) | 11, 324, 416, 645 |
| Kzo9I | GATC | 1 cut(s) | 289 |
| LweI | GCATC | 1 cut(s) | 422 |
| MaeI | CTAG | 3 cut(s) | 294, 390, 438 |
| MaeIII | GTNAC | 5 cut(s) | 341, 455, 473, 654, 664 |
| MalI | GATC | 1 cut(s) | 291 |
| MboI | GATC | 1 cut(s) | 289 |
| MboII | GAAGA | 4 cut(s) | 85, 92, 611, 665 |
| MflI | RGATCY | 1 cut(s) | 289 |
| MlsI | TGGCCA | 1 cut(s) | 696 |
| MluCI | AATT | 5 cut(s) | 123, 328, 403, 524, 634 |
| MluNI | TGGCCA | 1 cut(s) | 696 |
| MlyI | GAGTC | 1 cut(s) | 164 |
| MmeI | TCCRAC | 2 cut(s) | 88, 626 |
| MnlI | CCTC | 5 cut(s) | 160, 199, 202, 595, 673 |
| Mox20I | TGGCCA | 1 cut(s) | 696 |
| Mph1103I | ATGCAT | 1 cut(s) | 322 |
| MscI | TGGCCA | 1 cut(s) | 696 |
| MseI | TTAA | 5 cut(s) | 384, 491, 528, 567, 751 |
| Msp20I | TGGCCA | 1 cut(s) | 696 |
| MspR9I | CCNGG | 1 cut(s) | 378 |
| Mva1269I | GAATGC | 1 cut(s) | 554 |
| MvaI | CCWGG | 1 cut(s) | 378 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 345 |
| NdeII | GATC | 1 cut(s) | 289 |
| NlaIII | CATG | 4 cut(s) | 11, 324, 416, 645 |
| NmuCI | GTSAC | 4 cut(s) | 455, 473, 654, 664 |
| NsiI | ATGCAT | 1 cut(s) | 322 |
| NspI | RCATGY | 2 cut(s) | 324, 645 |
| PagI | TCATGA | 1 cut(s) | 7 |
| PciI | ACATGT | 1 cut(s) | 641 |
| PctI | GAATGC | 1 cut(s) | 554 |
| PfeI | GAWTC | 5 cut(s) | 4, 238, 409, 518, 700 |
| PleI | GAGTC | 1 cut(s) | 164 |
| PpsI | GAGTC | 1 cut(s) | 164 |
| PscI | ACATGT | 1 cut(s) | 641 |
| Psp6I | CCWGG | 1 cut(s) | 376 |
| PspGI | CCWGG | 1 cut(s) | 376 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| PsuI | RGATCY | 1 cut(s) | 289 |
| SaqAI | TTAA | 5 cut(s) | 384, 491, 528, 567, 751 |
| Sau3AI | GATC | 1 cut(s) | 289 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| SchI | GAGTC | 1 cut(s) | 164 |
| ScrFI | CCNGG | 1 cut(s) | 378 |
| SfaNI | GCATC | 1 cut(s) | 422 |
| SfcI | CTRYAG | 2 cut(s) | 153, 704 |
| SmlI | CTYRAG | 1 cut(s) | 484 |
| SmoI | CTYRAG | 1 cut(s) | 484 |
| Sse9I | AATT | 5 cut(s) | 123, 328, 403, 524, 634 |
| SsiI | CCGC | 1 cut(s) | 429 |
| SspI | AATATT | 1 cut(s) | 58 |
| SspMI | CTAG | 3 cut(s) | 294, 390, 438 |
| StyD4I | CCNGG | 1 cut(s) | 376 |
| TaaI | ACNGT | 2 cut(s) | 575, 692 |
| TasI | AATT | 5 cut(s) | 123, 328, 403, 524, 634 |
| TfiI | GAWTC | 5 cut(s) | 4, 238, 409, 518, 700 |
| Tru1I | TTAA | 5 cut(s) | 384, 491, 528, 567, 751 |
| Tru9I | TTAA | 5 cut(s) | 384, 491, 528, 567, 751 |
| TseFI | GTSAC | 4 cut(s) | 455, 473, 654, 664 |
| Tsp45I | GTSAC | 4 cut(s) | 455, 473, 654, 664 |
| TspDTI | ATGAA | 4 cut(s) | 45, 85, 515, 612 |
| XapI | RAATTY | 1 cut(s) | 328 |
| XceI | RCATGY | 2 cut(s) | 324, 645 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 541 |
| XspI | CTAG | 3 cut(s) | 294, 390, 438 |
| Zsp2I | ATGCAT | 1 cut(s) | 322 |