divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0328691 |
| rosa_roxburghii | Rroxscaffold_4G00321440 |
| rosa_samantha | Rh5DG251900 Rh5DG562900 Rh6CG478200 Rh7BG307400 Rh7DG038900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 243, 329 |
| AclWI | GGATC | 1 cut(s) | 98 |
| AcsI | RAATTY | 1 cut(s) | 141 |
| AgsI | TTSAA | 2 cut(s) | 11, 239 |
| AjnI | CCWGG | 1 cut(s) | 189 |
| AluBI | AGCT | 1 cut(s) | 303 |
| AluI | AGCT | 1 cut(s) | 303 |
| AlwI | GGATC | 1 cut(s) | 98 |
| ApoI | RAATTY | 1 cut(s) | 141 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 200 |
| BceAI | ACGGC | 1 cut(s) | 137 |
| BciT130I | CCWGG | 1 cut(s) | 191 |
| BfaI | CTAG | 3 cut(s) | 108, 203, 252 |
| Bme1390I | CCNGG | 1 cut(s) | 191 |
| BmrFI | CCNGG | 1 cut(s) | 191 |
| BmsI | GCATC | 2 cut(s) | 107, 236 |
| BpuEI | CTTGAG | 1 cut(s) | 319 |
| BsaWI | WCCGGW | 1 cut(s) | 210 |
| BseBI | CCWGG | 1 cut(s) | 191 |
| BseGI | GGATG | 2 cut(s) | 69, 251 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BsiSI | CCGG | 1 cut(s) | 211 |
| BsmI | GAATGC | 2 cut(s) | 331, 368 |
| Bsp143I | GATC | 1 cut(s) | 103 |
| BspACI | CCGC | 2 cut(s) | 243, 329 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspPI | GGATC | 1 cut(s) | 98 |
| BssMI | GATC | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 1 cut(s) | 191 |
| BstDEI | CTNAG | 1 cut(s) | 282 |
| BstF5I | GGATG | 2 cut(s) | 69, 251 |
| BstKTI | GATC | 1 cut(s) | 106 |
| BstMBI | GATC | 1 cut(s) | 103 |
| BstNI | CCWGG | 1 cut(s) | 191 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstSCI | CCNGG | 1 cut(s) | 189 |
| BstX2I | RGATCY | 1 cut(s) | 103 |
| BstYI | RGATCY | 1 cut(s) | 103 |
| BtsCI | GGATG | 2 cut(s) | 69, 251 |
| CviAII | CATG | 2 cut(s) | 134, 226 |
| CviJI | RGCY | 3 cut(s) | 152, 201, 303 |
| CviKI_1 | RGCY | 3 cut(s) | 152, 201, 303 |
| DdeI | CTNAG | 1 cut(s) | 282 |
| DpnI | GATC | 1 cut(s) | 105 |
| DpnII | GATC | 1 cut(s) | 103 |
| EcoRII | CCWGG | 1 cut(s) | 189 |
| EcoT22I | ATGCAT | 1 cut(s) | 135 |
| FaeI | CATG | 2 cut(s) | 137, 229 |
| FaiI | YATR | 7 cut(s) | 21, 23, 97, 128, 135, 227, 268 |
| FatI | CATG | 2 cut(s) | 133, 225 |
| FauI | CCCGC | 1 cut(s) | 336 |
| FauNDI | CATATG | 1 cut(s) | 21 |
| FokI | GGATG | 2 cut(s) | 76, 258 |
| FspBI | CTAG | 3 cut(s) | 108, 203, 252 |
| HapII | CCGG | 1 cut(s) | 211 |
| Hin1II | CATG | 2 cut(s) | 137, 229 |
| HincII | GTYRAC | 1 cut(s) | 261 |
| HindII | GTYRAC | 1 cut(s) | 261 |
| HinfI | GANTC | 1 cut(s) | 222 |
| HpaII | CCGG | 1 cut(s) | 211 |
| HphI | GGTGA | 2 cut(s) | 37, 200 |
| Hpy166II | GTNNAC | 2 cut(s) | 208, 261 |
| Hpy188I | TCNGA | 1 cut(s) | 63 |
| Hpy188III | TCNNGA | 2 cut(s) | 37, 298 |
| Hpy8I | GTNNAC | 2 cut(s) | 208, 261 |
| HpyAV | CCTTC | 1 cut(s) | 73 |
| HpyCH4V | TGCA | 3 cut(s) | 133, 179, 249 |
| HpyF3I | CTNAG | 1 cut(s) | 282 |
| Hsp92II | CATG | 2 cut(s) | 137, 229 |
| Kzo9I | GATC | 1 cut(s) | 103 |
| LpnPI | CCDG | 3 cut(s) | 176, 203, 224 |
| LweI | GCATC | 2 cut(s) | 107, 236 |
| MaeI | CTAG | 3 cut(s) | 108, 203, 252 |
| MaeIII | GTNAC | 3 cut(s) | 154, 269, 287 |
| MalI | GATC | 1 cut(s) | 105 |
| MboI | GATC | 1 cut(s) | 103 |
| MflI | RGATCY | 1 cut(s) | 103 |
| MluCI | AATT | 3 cut(s) | 141, 216, 338 |
| MnlI | CCTC | 1 cut(s) | 39 |
| Mph1103I | ATGCAT | 1 cut(s) | 135 |
| MseI | TTAA | 3 cut(s) | 197, 305, 342 |
| MspI | CCGG | 1 cut(s) | 211 |
| MspR9I | CCNGG | 1 cut(s) | 191 |
| Mva1269I | GAATGC | 2 cut(s) | 331, 368 |
| MvaI | CCWGG | 1 cut(s) | 191 |
| NdeI | CATATG | 1 cut(s) | 21 |
| NdeII | GATC | 1 cut(s) | 103 |
| NlaIII | CATG | 2 cut(s) | 137, 229 |
| NmuCI | GTSAC | 2 cut(s) | 269, 287 |
| NsiI | ATGCAT | 1 cut(s) | 135 |
| NspI | RCATGY | 1 cut(s) | 137 |
| PctI | GAATGC | 2 cut(s) | 331, 368 |
| PfeI | GAWTC | 1 cut(s) | 222 |
| Psp6I | CCWGG | 1 cut(s) | 189 |
| PspGI | CCWGG | 1 cut(s) | 189 |
| PsuI | RGATCY | 1 cut(s) | 103 |
| SaqAI | TTAA | 3 cut(s) | 197, 305, 342 |
| Sau3AI | GATC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 1 cut(s) | 191 |
| SetI | ASST | 2 cut(s) | 84, 305 |
| SfaNI | GCATC | 2 cut(s) | 107, 236 |
| SmlI | CTYRAG | 1 cut(s) | 298 |
| SmoI | CTYRAG | 1 cut(s) | 298 |
| Sse9I | AATT | 3 cut(s) | 141, 216, 338 |
| SsiI | CCGC | 2 cut(s) | 243, 329 |
| SspMI | CTAG | 3 cut(s) | 108, 203, 252 |
| StyD4I | CCNGG | 1 cut(s) | 189 |
| TasI | AATT | 3 cut(s) | 141, 216, 338 |
| TfiI | GAWTC | 1 cut(s) | 222 |
| Tru1I | TTAA | 3 cut(s) | 197, 305, 342 |
| Tru9I | TTAA | 3 cut(s) | 197, 305, 342 |
| TseFI | GTSAC | 2 cut(s) | 269, 287 |
| Tsp45I | GTSAC | 2 cut(s) | 269, 287 |
| TspDTI | ATGAA | 1 cut(s) | 329 |
| XapI | RAATTY | 1 cut(s) | 141 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 355 |
| XspI | CTAG | 3 cut(s) | 108, 203, 252 |
| Zsp2I | ATGCAT | 1 cut(s) | 135 |